RNA id: AMCG00004231



Basic Information


Item Value
RNA id AMCG00004231
length 1104
RNA type mRNA
GC content 0.37
exon number 3
gene id AMCG00004231
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39445199 ~ 39453488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAGCGCCCGCCTGCTGCTGTGCATTATTActGGGAAGCACACTGCCAGTTCCCACCGGCTCTCAGCGCTGGTGACCCCAGCAGGCCGGTCCTATGAGTGCCAGGCCccacagactctctctctcatctccacTGACCACCAGAAAGGAGTGACAATTACATTGGCTGATGTCCAGATCCAGCCCTTTGATATCAAGAGCGATTTCATGTTCAGTGAAGcatataaatgtattactgacCAGAGAGAACAACTAGAGGAAACCTTGCCACTGATTTTGGGAATCGTCCTGGGACTTATCATTGTAAtcactctctctgtgtatcACCTGCATCACAAAATGACTGCAAGTCAACCCCAGCTTCCAAGAGACAGGTCCATGTATAAGAATATGTGAGGACTGGTTGTTACCGTCAGGATAGGAACTGATAGTTAACCGGTTTTCAGTTTTGTCATCAGAAGTGTATTTATTGAAACAGATTTTCAGAGGCTGAAGGCAGTTGAAGGCGgtgcagatttttattttgtgctttaagACACGTCTTTGTAGCGATTCAAAGCCCATACATTCTGtgttattaaatgcattcattatctTGGTTTACCTGGAGAAATAAGCTGTAAAGAAGTCATTAAGATGTATAAAGCACAACCTGTTttaatattgcttttgttttttatgttgtatttacAGGTGTGGGCAGTACTGTGTGTTATGCAAATGGTGTAAAATTACtcatcagattaatttattttttacctttattGCCCATTTTTGACAATGTATGTTTACTTTACCAGGTGGCAGAATATGAAAcgctatatttaatttaaatgtataaatttgtaaaatgtgtaaataaatcaatgaaattGTAACAGAATCAAAACAATGTTCTCTGTACTGTATGCTTCTGGCTGGGGTAGTGCAACATATGTGTTTATTGCAGTAAATGCTTGAACATTTattgcagaagaaaaaacaaatattgcccaaaaaatgtaataattttaacattaaagTTTGTATAAGGAGATGCAAATGAATATTGaagttaaatgtgtaaaattatatttcaagaaataaattaatgcaacaCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8179 lncRNA upstream 296905 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA upstream 296905 39122678 ~ 39148294 (+) False G6684
TU8170 lncRNA upstream 478309 38966678 ~ 38966890 (+) True G6676
TU8160 lncRNA upstream 518169 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 586194 38858118 ~ 38859005 (+) True G6653
TU8288 lncRNA downstream 314896 39768384 ~ 39768607 (+) True G6769
TU8290 lncRNA downstream 316977 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 491012 39944500 ~ 39945055 (+) True G6807
TU8358 lncRNA downstream 561779 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA downstream 561779 40015267 ~ 40034323 (+) False G6819
AMCG00004233 mRNA upstream 2490 39441126 ~ 39442709 (+) True AMCG00004233
AMCG00004230 mRNA upstream 8951 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004229 mRNA upstream 132496 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004228 mRNA upstream 151966 39249462 ~ 39293233 (+) True AMCG00004228
AMCG00004225 mRNA upstream 481564 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004240 mRNA downstream 106004 39559492 ~ 39559927 (+) True AMCG00004240
AMCG00004235 mRNA downstream 139455 39592943 ~ 39598254 (+) True AMCG00004235
AMCG00004236 mRNA downstream 385880 39839368 ~ 39846699 (+) True AMCG00004236
AMCG00004246 mRNA downstream 432177 39885665 ~ 39892826 (+) True AMCG00004246
AMCG00004249 mRNA downstream 557037 40010525 ~ 40012375 (+) True AMCG00004249
TU7800 other upstream 2445041 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2553453 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2670676 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3170269 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3679019 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2006088 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2759022 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3235291 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6508522 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8693400 48146888 ~ 48147156 (+) True G7999

Expression Profile