RNA id: AMCG00004233


Basic Information

Item Value
RNA id AMCG00004233
length 1584
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00004233
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39441126 ~ 39442709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGAAATTGTCTGAGAAAGCAAACGAGCAGACTGGGGCTGCAATCCTGCTGGAAGCGATGTCCAATGACAAGATCCACTTGGCGAGGTTCATTTTGGACGCCCTGGACGGCAAGATCATCAATGCACGGACAGAGAGAGCTCAGACCCCTCTCATGTCTTCTGTCCTGCTTGCCGACACACACATGAGCTCTAAGTTCAtgaagctgctgctgcagagaggCGCAGACGTCAACTGCCAGGACGAGAGTGGACGCACTGCCCTGAGTTACGCGTGTGAAAGGGGGCACTTGGAGGCAGTGAAGACCCTCGTTCAGAATAATGCGGACCCTGAACTCGTAGACATGTGGGGGAACACGGCTCTGATTTATGCCGCGGTGGCCGGTCACACCTCGGTGGTGGCATTTCTAGTGAGAGCTTTTAAAAGGATGGGTCTGGAGATTGACCGACCCAACCGAGTTGGCAATTCTGCGGTTGAGGTCGCTAAGTTCCTGGGGCATAAAGAGTGTTTCCTGGCACTAACGAGTCACACCAAGAAGAGCCATGATAAAGAAATAGATGTGCTTCCACAGAGTCAATTTAAGAAACATGTACTCGAAGACAAGTACTCCAGAAAGTTTTCGGAACAAGTCAACTTTAAACATATCAATAGTCCCGTGTGCCCACCTATTGAGCCAAGATGCGCCATCACCGCAAATGAAAATGAACGCGCTGACGTTTCAGATCGGAAAAGGTCTCAAAGTGTGAGACATCGGCTGGCATCTATGGCTTCAATAGAcgagacagaaaaggaaagcgAGGGTGCTCTGCAGTCGCCAAGATTAGATGTTTACAATGGTCTTAGCGTAAGACCACGTGTGCGCTCTTGGAGTGTCCAATACAGTAACCAGAAACTGCAAGAGAAAACTAACAACGTGCATCTGCATTTACCACACTTACCTGCAGCCTCCGATCTCCAGATTTCAACTTTGCATTCGCCAAggccaaataaaaacacaccaaacaGTTCTGCTCCAAATCGGGTTCACACTTCTGTCTCCACCTCCACACTTTGGTCCAGTCCTCTTGGCATCCTGTTAACCCCGATTGCGGCGGCCAAAACTGGTGAAGACCAAGTGCAGATCGAAAAGCTGAAACAGTCCGACTTGGACACAGGAGTCAGACGATTCGACGACAGTTACTATCAGAAGAGGTGCAGTTTACCCACAAGCACTCTGCATCCAGCGCCCCCTGAGCGGTGGCTGCTGCCTTTGCGCAAACCAAAGAGTGGGCAGAAAAACGGTCACCAAGGATCGCCGAGTCCGACTGCGCCCATTGCCTCAACAACTATCACAGGACTAGGAAACAAACTATTCCGGCGATTCACTTTTCCCGAGTTCAGAAAGGTGGACAAGGACCAGCAGGAGGATAGATGCGCCGATGCGTCGGTCAGCAGCCCTGACTTATTAGCGCGGGGCATGTCCAGATCTGAGACTTATCCTTTCAGTAAAAAGCATCCCCAAGTGGGAAGCAAACCCAGCATCGACAGCATCAGCGCAGTGAAGTGCGAATTTGACTTTCCCTTTAAATCCACTGCATCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8179 lncRNA upstream 292832 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA upstream 292832 39122678 ~ 39148294 (+) False G6684
TU8170 lncRNA upstream 474236 38966678 ~ 38966890 (+) True G6676
TU8160 lncRNA upstream 514096 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 582121 38858118 ~ 38859005 (+) True G6653
TU8288 lncRNA downstream 325675 39768384 ~ 39768607 (+) True G6769
TU8290 lncRNA downstream 327756 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 501791 39944500 ~ 39945055 (+) True G6807
TU8358 lncRNA downstream 572558 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA downstream 572558 40015267 ~ 40034323 (+) False G6819
AMCG00004230 mRNA upstream 4878 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004229 mRNA upstream 128423 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004228 mRNA upstream 147893 39249462 ~ 39293233 (+) True AMCG00004228
AMCG00004225 mRNA upstream 477491 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004224 mRNA upstream 585809 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004231 mRNA downstream 2490 39445199 ~ 39453488 (+) True AMCG00004231
AMCG00004240 mRNA downstream 116783 39559492 ~ 39559927 (+) True AMCG00004240
AMCG00004235 mRNA downstream 150234 39592943 ~ 39598254 (+) True AMCG00004235
AMCG00004236 mRNA downstream 396659 39839368 ~ 39846699 (+) True AMCG00004236
AMCG00004246 mRNA downstream 442956 39885665 ~ 39892826 (+) True AMCG00004246
TU7800 other upstream 2440968 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2549380 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2666603 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3166196 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3674946 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2016867 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2769801 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3246070 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6519301 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8704179 48146888 ~ 48147156 (+) True G7999

Expression Profile