RNA id: AMCG00004241


Basic Information

Item Value
RNA id AMCG00004241
length 5014
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00004241
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39858488 ~ 39867709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGTTATGTGGAGCTGGAAAGTGAACACATAGGCGATTCATTGGTGTGAGAGGCGGGGAAAGGacacttcattttttcatcAATTTTATGTTGCTGgaattgtcatttaaatattgGTTCATTggcagtttaaataaatgagatACTGTGGTGTCAGCAGTGAAAGCTTACGGCGCGGCTGAGAAGCTGCACTACAGTTGGGTGAGACCAATAAGATGCCTTCTTTTTCGTGGAGGTTTTGGTCAGGGCTGGTCCTGGTCATGCTGCCCTTAGCCCAAGCTGCTGAAGGGGAAACGCTTTTACTGGGAACTTGGACTGATTTCTGGTTGTTCCGTTTCCTTCTTAATGTCTTGGGATATGCTACAATTGCTGTCCCTGGCTTCCTCCTCATCAAATACTTGAAGAGGATTAACTACCTTGAAACAGGTCGTGGCATTTGCTTCCCTCTTGTGAAATCCTGTGTTTTTGGGAATGAAGCCAAATCTGGTCTGCTAGAGGAAGTGCCTGCACCATCAAGGAATGAGGCAACAGAATCGTCTTCAGCCAGACAAGCCTTTAAACTGTTGTTCTGCGCCGCTGGACTACAGGTTTCATACTTAACATGGGGTGTCTTACAAGAGCGCGTCATGACACGCACCTATGGGGCTACCAGCACAGAGGAGGGTGAGAGGTTCAAGGATTCCCAGTTCCTGGTCTTCATGAACCGCATCCTTGCCTTGACAGTGGCTGGCATTTACTGCTCCCTCATCAAACAACCTCGGCATGGGGCCCCAATGTACAAGTACTCCTTCGCCTCCCTTTCCAACATCCTGAGTAGCTGGTGCCAGTACGAGGCCCTCAAGTACATCAGCTTTCCCACCCAGGTGCTAGCCAAGGCTTCCAAGGTCATCCCAGTAATGCTGATGGGGAAACTGGTTTCCCACAAAAGCTACGAGTACTGGGAGTACTTCACGGCTGTGCTCATCTCTGTGGGGGTCAGCATGTTTCTGCTCTCCAGCAATGCCAATAAACATCCCTCCACCGTGACCACCTTCTCCGGCGTGATCATCCTGGGCGGCTACATCATTTTCGACAGCTTTACCTCCAACTGGCAGGACAACCTGTTCAAGTATAAGATGTCGTCAGTACAGATGATGTTTGGGGTGAACCTCTTCTCTTGCCTCTTCACAGTGGGTTCTCTTCTGGAGCAGGGGGCCTTCTTTGACTCTTTGGCCTTCATGAGTCGCCACTCGGAGTTCACGTTCCACGCTGTGCTGCTCTCTGTGTGCTCCGCCTGCGGCCAGCTTTTCATCTTCTACACAATTGGCCAGTTTGGTGCCGCCGTCTTCACCATCATCATGACCCTGCGCCAGGCCATCGCCATTCTCCTGTCCTGCTTCCTGTATGGCCATGCTGTTACCATGGTGGGAGGGCTGGGAGTGGCCGTCGTCTTCCTCGCCCTTTTTCTCAGGGTCTATGCTCGGAGCCGCATGAAGAAGAGGAGCAAAAAGGCGGTGCAGAGCTCGTCTCCCGTGCTGAAGGTTTAAGGACATGAACTGTATATAGAGAGACTTTAATCCCagttatgtttaatgttttatttgctctttttattttatttcattggttttgtattttataaagtaaAGGTACGTAAAAAGGGAGTTGCCTTTATTggatgtatttgttattgtatgtgtgtgtcggAAGGTTAGGAAGATGACGACTAATGCACAAAGTCTTGCCACCCACCTCTTAATTTAACTGCTCCATTATCTGACACATGCACCTTTCAACTGCCAGAGTCTGTGACTGTTGGCGTGtttctgtaatttgtttaaatgggtCCTGAAAGCAGCATTAACGCCATACTGGAGGAGATGCCAGGTGCAGATGTGCAAGAGCATTATTACTGTTATACATCATGGGTCTTCTCTCCACTCACGCAGGGAGTGTTGCAGTTTAGTTTTCACTGATGATTTGGGACTTGGTAAAAGAAAGAAGATCAGACTGGATGCAGTAATGATTTCGTCCCCATCAGTTGCAATAACCATCAGACACTGCTACATCCAAGAGATGACTTTGAAGTTTTGATCAGTTACACAGTCCCCAGTGGAGACCAAGGTTAGCCCTCTAgtcccttttaaaatgcattaaacattgAAGCATCTGTGGATCTCCGTAAGCAAAAGGTTTTAGgcatcatccatccatccatccatccatccatcctcctatttgatcatgttttgaaatggtttttatattttctgtgaaatgcaaccttgcttttaaaatattcgGGACGGTTTTAGCCCTATATTTAAACAAAGCTTTTCTTTACATATTGAAATGCTAATGAAGTCTTAaacaagactttttttttcctgcaaaaaaCTATTTGTGATGATAACTTTAATCTGACGTACTGAATTGGAGTTGTGTAACATTGCCTTCGTTGGCTACATTACTAATGCTTTCTTTACTAAACCAAAGGTGGCAGAGATAACGGAAGCCCTGCCCAGCTGCTATAGGACTACACTATTgaattactttacttttttagttgtttaatttaaaaatgttaattacagaGGTGTCACTTGTTTAGCCCATGCAGTTCCACTTTCCCTGTTCTGGTCActgtagttttaaatatattatttaaacactcattgctgttttattaccattattgcCCTATAGTTTGTCTTCACACTTCACACATTCCACGTATGATTAACGTGATCTATACTTTGCTACAGATCTATGCACATAGCAGCTCATCtggtaaagaaaatgaaaaaaaaaatcccatttaaaattGCACAATTTCACAGTTAACTTTCATAATTCAGCATTAGCATCACACCATTacttcacacaaaacaaatgtcattccTTTCAGAGAGAAAAAGGAAGCGTATTCACACTATAAAAGTCATTGTCAATTATTACCAGGGGAATTTACCATTTTGCAACCCATGAACCATGAAGTGTATGAGCAACCAATTACAGTTGAGTATCGAGCAGGTAAATTCCCCTGGAGTGAGGAGGCTGGGGCCATTTAAAAAGACTTTTACCACATCTTTTGGATTTATGAAGtaaatttaagttaattaaattttGGTCTTAATGATGAGTTAGATTCTGTCCCTTTGCTGCTTTCTTCTTGGAGCAATGCAATTATGAAATTGTATTGCATTAAGTAATATTTTCTGCTGATTTTgaagtaataagtaataatcTTATTTTTTAGATAAGCTGGTCATCACACACACCTCACATATAAACAACATCTATTATAAagattttataaatgaagataACTTGTTGGTATGCACCAAAGCTTCATTCTTTATATGTGTAGGAAACTACGCAAATACAAGCATATATTGGTATCCTCCTTAACTTTGAAATCTGAAGTTGCCTATCCTCTAATAATTTGTCCTTTACCTAAATTCGTGAAATTATATGAATATGGAAATTGGAAGCAGATTTACCATTTTATTATGTCACACTTAGAATTGGGTACATGACAGTGTTCTGAATGAACACATGTGCTGTTATCAAGGCTCACAAATCCCTTGTTCGTGCTGCACCATCTTATCCAACATGCACTCTACACTTTCGACTCCGGCTTAATAGCCGACTGAAGATCCCGATATTCCCAGTACCTAGATTTTTTGAGGACTCAATTGTTCACATTTTCCATCTCCTCTCTTGAATGCATATATAAAGTTAAGGTTGCATACAAGTACATCAGCGCTAAGTCACTGTGACAGCCTTGTTCTCTCTCGTTAATCAGTTATTCACAGCCTGGAATTAACCAATAGTCTGGAAAGAAACCTCACCTAATAGGGTCAAATTAGCGTCTCAAACGGCAAAGAAACATCTGTTAGACAAGCAGTAGAAGAGCAGTCTGCAAACTTACTGTGCAAATGTGCCTTTCCAGCTGCAACTTCtgctttaaatcatttttatttagtttatctTGTTATGAAtaatctttttcctttttaccaTTTCTAATAAGAAAtccattgtttaaaaatatttgtagagTATATTCTGATGATTATGTGACCAGTAACCAGACCATTTTTATATAATGCAGTGGAAGAAAAAAGGTTTGATCTTATTATCCAAGTAATGCAATAATTGTGCGGCTGTTAAACATCAAGTGCAATAAAGCATAATAATCTGTGCCGTTTCAAAAAGGGTGATTGCCAGCCTGCCACAACATTGATAGGGTCCAGGGATACACAGCAACTACTATCAAGATACAATTACCCAGTACTTACAACTGGTATTACAGTACTGAAGCTGAAGTCTGTACTTCATTTTGACAACAGATACCAATTTCTTAATTTAcaatgtttgcattttcaagCACTCTCGCTCAATAGTTGTGAATGGtgactgattttattattacagagaATGGGACTCCactttcaggttttttttgtgtgtcaaaTTCATGaatgtgtcattgttttttgttgtttttgctgtgaATTAAGTGAAATCATAATTGGTGAGCTATTGGGACCAGAATAAATGGGTGAGATGTTAGAGATAGAAAGTTGAACTGAGGTTCTGTATTTTCCCACAAAATTGATCAGTTTCCTAAAATTGTAGTGTTGCAGTTTCACTATGTATCCTGATTGCATTGGGGATTTCTGTGTAAGAGAGTATGGGTGATGCTGCCTGCGTTTGAATGTTGAATGTAGGGATTTCTACAAtgctttacacattttacacGTTTAGTATAAACGTATACTGCTGTATTCCATAACACTACTGAATGTTATAACTTTCCTGAGAAAGGTACTGCTGCAGTTATGACTGCTATGGGAGTAATTTTCAAATAGTAGCACAATGAAAAAATGGCATGGTCTAatatgataaatacattataattttaaaacagcCACACTTACTTTTTCAAATATGACAATTTTGTATCTTTATTGTACTGATTAAATCCAAAAGGTTGTATCAAAGTAGACTTcatatgtgaaataaaa

Function

GO: NA

KEGG:

id description
K15276 SLC35B2, PAPST1; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8321 lncRNA downstream 17406 39839168 ~ 39841082 (-) True G6793
TU8289 lncRNA downstream 89878 39768409 ~ 39768610 (-) True G6770
TU8276 lncRNA downstream 261849 39594941 ~ 39596639 (-) True G6762
TU8161 lncRNA downstream 931466 38926721 ~ 38927022 (-) True G6668
TU8086 lncRNA downstream 1242023 38616219 ~ 38616465 (-) True G6599
TU8357 lncRNA upstream 142702 40010411 ~ 40014259 (-) True G6818
TU8363 lncRNA upstream 147525 40015234 ~ 40034323 (-) False G6822
TU8364 lncRNA upstream 152470 40020179 ~ 40034323 (-) True G6822
TU8389 lncRNA upstream 210308 40078017 ~ 40078283 (-) True G6838
TU8425 lncRNA upstream 258839 40126548 ~ 40126792 (-) True G6872
AMCG00004239 mRNA downstream 195891 39657951 ~ 39662597 (-) True AMCG00004239
AMCG00004237 mRNA downstream 213310 39601527 ~ 39645178 (-) True AMCG00004237
AMCG00004238 mRNA downstream 280519 39564916 ~ 39577969 (-) True AMCG00004238
AMCG00004234 mRNA downstream 379408 39457144 ~ 39479080 (-) True AMCG00004234
AMCG00004232 mRNA downstream 713228 39125700 ~ 39145260 (-) True AMCG00004232
AMCG00004244 mRNA upstream 5352 39873061 ~ 39881929 (-) True AMCG00004244
AMCG00004243 mRNA upstream 38560 39906269 ~ 39911511 (-) True AMCG00004243
AMCG00004242 mRNA upstream 66608 39934317 ~ 39942767 (-) True AMCG00004242
AMCG00004247 mRNA upstream 82983 39950692 ~ 39951933 (-) True AMCG00004247
AMCG00004245 mRNA upstream 84412 39952121 ~ 39967735 (-) True AMCG00004245
TU8320 other downstream 9365 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 2489666 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 4444042 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 4894649 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 4965875 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 2509017 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 4653205 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 6439217 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 6600416 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 7016926 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile