RNA id: AMCG00004251



Basic Information


Item Value
RNA id AMCG00004251
length 603
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00004251
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40059946 ~ 40083528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATCATGCAGTACAGCCACGTCCTGGAGAGGTGTGTGGATGCAGTTCTGAGGGGGTCTGCCATTGTAGAGTCGGGAGCACATCTGCTTTTCCTCCAACGCTGCCTTCTCCACAGCGCCGCTGTCAGAGGCCAGAGGCTCGAGCTCATAGTGCTCGTGCTCCACCTCGGCCCCTCTAGCGTCCAGCTGATACTTACTCGTGTGGCACAACTTACTCTGGCTTCTGGTGGCAGGAGCTGTGGTGGACCCTTGGGAAAATGCCTGACACTGCAGTCTTTTGGGCAGGGGGATCTGCCCACAGGTGCCTTGGGGTCCCAGACATCTGCACATGCACTGGAAAAAGAAGGTGGCGAAAGCCCAGCTGATGCACATGATGAGCATCATGAAGGTGCCGAGCTGAGTGTAGGCCAGGACAGTGGAGGGCATCATCATGGCTCCAGCCACGAATGTTGTCAGGGCAGCCATTGCAATAGCGGAGCCCATGCGGCTCAGGGAGAAAACCACCTTGCCCTCTCGGTCTGGTTCGGGCGCAAGGCGGTAAGCCACTCCGTAATGAACAGCAAAGTCCACCGACAGTCCTACTGCAACAGAAATGGTGACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8358 lncRNA upstream 25623 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA upstream 25623 40015267 ~ 40034323 (+) False G6819
TU8360 lncRNA upstream 25623 40020076 ~ 40034323 (+) True G6819
TU8339 lncRNA upstream 114891 39944500 ~ 39945055 (+) True G6807
TU8290 lncRNA upstream 289248 39770465 ~ 39770698 (+) True G6771
TU8391 lncRNA downstream 5080 40088608 ~ 40088914 (+) True G6840
TU8398 lncRNA downstream 26672 40110200 ~ 40113951 (+) True G6847
TU8401 lncRNA downstream 65434 40148962 ~ 40198962 (+) True G6850
TU8456 lncRNA downstream 255539 40339067 ~ 40341208 (+) False AMCG00004257
TU8623 lncRNA downstream 894471 40977999 ~ 40978319 (+) True G7048
AMCG00004248 mRNA upstream 5494 40037711 ~ 40054452 (+) True AMCG00004248
AMCG00004250 mRNA upstream 29838 40021629 ~ 40030108 (+) True AMCG00004250
AMCG00004249 mRNA upstream 47571 40010525 ~ 40012375 (+) True AMCG00004249
AMCG00004246 mRNA upstream 167120 39885665 ~ 39892826 (+) True AMCG00004246
AMCG00004236 mRNA upstream 213247 39839368 ~ 39846699 (+) True AMCG00004236
AMCG00004254 mRNA downstream 101349 40184877 ~ 40194871 (+) True AMCG00004254
AMCG00004256 mRNA downstream 136996 40220524 ~ 40228831 (+) True AMCG00004256
AMCG00004255 mRNA downstream 152000 40235528 ~ 40248464 (+) True AMCG00004255
AMCG00004257 mRNA downstream 242882 40326410 ~ 40341235 (+) True AMCG00004257
AMCG00004265 mRNA downstream 487432 40570960 ~ 40598834 (+) True AMCG00004265
TU7800 other upstream 3059788 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 3168200 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 3285423 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 3785016 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 4293766 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 1376048 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 2128982 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 2605251 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5878482 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8063360 48146888 ~ 48147156 (+) True G7999

Expression Profile