RNA id: AMCG00004266


Basic Information

Item Value
RNA id AMCG00004266
length 3557
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00004266
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40722163 ~ 40729804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATAATCCGCGCTGTTTGGGAAGTTTTTTGTGCAATAAGTTAAACTCTTTTGGagtttaataatattgtaaatgcGACGATGATGAGGGAATCGCCTAGGTCTTATCAAGAGttGTACGATGAAGGGGATCGAGCTCAGACTAGTCCTCATGAGCAAGAATGTGTGGAAGACCTCGAGTCCGAAGATGGCAATGGGAGGACCTCACCAGCTGTGGACGACGAGGCCGGGAACAATAACCTTTCGATGGGGTTCAGCAAGACCTGCCTGAagaatgtgttttctgtgaTCCTCATCTTCATCTACCTGTTGCTGATGGCTGTGGCGGTGTTCCTGGCCTACCAGACCATCGCTGACTTCATGGAGAAGCTGAAACATCCTGTGATGTCCGTGACCTACAAAGAGGTGGACAGCTTTGAGGCTCCCGGGATTGCACTATACCCTGGCAAGGCCAGACTCCTGAGCTGTAAGCACCATTACCACAGCCACATCCCTCCTCTGGTCACACCGGGGCAGCCTGGAGATGTCAACTGTTTCACTGATCAAATCAACTACACCGATCCCTTCACCAATCACACCACGAAGCACGCTCTGGTTGTTCGAGGGCCCAGTTATGTCAGGAAGAGGGAGCTGATTTTTCTGCAGTTCAGCCAAAATGAAACTGAACAAGATTTCAGTGCCATCAATTACCTGCTTTTTTACTCCTTTAAGGAGTTTGCtggaagTGAAGACAAAGCCCAGTTCATGAAAGACTGCGAGAGATCCTACTCGATGTGGACCTTCTCCGGGGGGTTCCGCACCTGGGTCAAGATGTCCTTGGTGAAGACATCAGAGAAGGACGGCAGTGAGTCGGTGGAGTTCAGACAGGAGTCCAGCGTTGTGAAGTACAATGATCGGAGGAAAGACTCGGACAAAACAAATCAGCTCTTCTTTGTCGTTTTTGAGTGGAGAGACCCTTTTGTTCAGGAAGTCCGGGATATCATCACAGCAAACCCCTGGAAAACCATCGCCATCCTGTGTGGCATCTTCCTGGCTCTGTTCAAGGCGGCCGACTTTGCCAAGCTCAGCGTGAAGTGGATGATGAAGATTCGCAAGAGGCAGCTGAAACGCAGGAGCAGGGAGATGAACCAGGTCAGCTGAGCCGCTGGAGTGCAGAGGCGCCCTCCCTCTTCAGGCGCTTCCCTCCGAGCGGCCTGCTCCCGCCGTGCTCGGGGTGGGGAGACGGAGGCTGTGAACTGGTCTCTGGGATCGCAGCTGCTACGGGACTAGACAACCGGACCGGATTCAAGTTATGTGGAGTGACTACACAGTAATGAGAACATTGCGGTGACTTAAAACATCAACGTTGTGAACTATCTGACCCTTAATACCGCATCTAGGCCTTATTAACCCATTGAACAGTTTCTACTTGATCTGATTCCAAGAGGCAGCTGGATATTGCACTCAATAGCTCTCCTCTAGAGATATTAATGGCTGCGCTGCCTGAAACCCAAGTAGATGTCTGTTGAGTCTGCAGAATAGTGGAAAACACCCAAACACACGGTCTTATCGCTGTGTGGCTTCTGTTCTACAGTTAGGAGATCCTCAGGGGTGGTGTATGGAGGTGCTTTTGTCTCTGCTTGTGCCGCTCCCACACACAAAGTTTTGTAAACCACATGGAAAACGCAAACACTGAAGAGCACCAACGAGAACAATGTGCACTGAAATGTTTGTTACTGCTATTTTGTGCAATAGGCTACATTATCCCAGAGTATGAATCTTGTTTCTGATAAATGTACTGTTGATGGGTAACTTCAATGACATTACTGTGATCAGTGGGTCctgcatttttagatttttttaacatttctgtgCCTTTGTATATTACGCACAACTAGGATTTACTAAATTAAGTTATACTAATTTACTAGTCCTGTaacttaacaaaaaaataacaacctgttcacatttgaatacaaaatatgtaaataattagcATAGGTTGTCAATCTTAATCTTTGTATTGAAGGTcaactgaactgaaaactctTAAAAATaggcttttaatatttaatacattttaaaatgtcagcaaCAGAAGTGTAACAGTGGTGTAAGCCTAACACAAATGTAATATcaattaactctctctctctattctgttattttatgaGAAGTAGCACTTCCACACTAGGtgtaaggagagagagaggtcggTAGTTTCTGCAGGGCAGGGTAATGCTGTGCTCTGCTCCCACCATGTCACACAGCACTGGCAGGTTTCAGGCACTGAGCCGAGTAAAGCAATAGCACTTCtggcaaagcaaacaaacatcacaTTGTCTTAATACTAAATAAggattcctttgttttgttttttctctttcctctgtTCGTTTGACCTTTCAGGGTCCgtttgatttctttttaattatttaattaatagaatTACATTTCTTGATCTTTTTGATTGTCATGTCTTATACAATATGCTGTGTTATCTAAGATTGTAAATGTCTGTCAGTGACcgtatataatatacattagtCAAATCTAGAGAATAGATTCATTAACACTGGAGTCGTGTATAGAGaaagtaacaaacaaaacaaaaacctctgtGACGATAAACTGGAAAACGAATCTTTGTAGCGGGGTTTGTTTTGAGTGATATTCCTgccattatattatatacagagaggaagagaacaAATTTTTCACCTGGGATATACTTGAACTCATAACAGTTAAAACAATCCATTAATGTCTACCTCTCACTAATTCTTAAACTAACTTGGAAAGTTCCTAAGGCACGCTGTACAGGGATCTGGTCCTTTGTTTGTGCGGAGATTTCAAGCATGTCAAATTACTGAAAAGCAATTTGATATCCCTGAACAGACACCCTTGTGTCTTGTTAGATTATTTCTCAGGTAACATGCTGAGTCACAGGCCATTCTTAAAGCTATACAAGGAGCCGGTTTGAATAATGGACacaattttgaaatacagtGCTCACCAAAGGcttttatgtaaattgtatataaattatgtttttgtgtatttctaatacatttagaatacaatatatacatatgtgagTATTCCATATGGGCTGATGCGAGGATATTTATGTTAGGTGttagggaagaaaaaatattaattcccAACTATTTGTCTGACATTTGTggattacaaaatgtaaagccCTTTAAGTGTGACTGTGAAATActacttttaacatttttccttttttgtaaaaccttaCCTTTAAGCCTGTATTATCTTTTCAGTGGCAAGctggtaataaaaaaaatgattacacTCGACTTCTAAAGCACACCTCGTGTTGGTTCTGGGTTCCTCGGGTGTTGAACATGCAGTAAAGGCAAGTAACATCTTCAGCTCTAAGTAGAAACATAAGGTAGACTTTATTTGATGGTGTTCAAAACCCCCATGAAGGTCTTTcattacaaaacagtttttccACACAATTGTATGTTAACAGAGATTGGAATGGTACTCTGACAGAAGGCATCAGAAAGACTAGAATACAGACGTACATCTTTTCACTGCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8456 lncRNA upstream 380955 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 523201 40148962 ~ 40198962 (+) True G6850
TU8398 lncRNA upstream 608212 40110200 ~ 40113951 (+) True G6847
TU8391 lncRNA upstream 633249 40088608 ~ 40088914 (+) True G6840
TU8360 lncRNA upstream 687840 40020076 ~ 40034323 (+) True G6819
TU8623 lncRNA downstream 248195 40977999 ~ 40978319 (+) True G7048
TU8658 lncRNA downstream 565494 41295298 ~ 41364066 (+) True G7078
TU8666 lncRNA downstream 637341 41367145 ~ 41368478 (+) True G7084
TU8687 lncRNA downstream 793249 41523053 ~ 41529308 (+) True G7102
TU8686 lncRNA downstream 875306 41605110 ~ 41606759 (+) True G7101
AMCG00004264 mRNA upstream 103973 40606454 ~ 40618190 (+) True AMCG00004264
AMCG00004265 mRNA upstream 123329 40570960 ~ 40598834 (+) True AMCG00004265
AMCG00004257 mRNA upstream 380928 40326410 ~ 40341235 (+) True AMCG00004257
AMCG00004255 mRNA upstream 473699 40235528 ~ 40248464 (+) True AMCG00004255
AMCG00004256 mRNA upstream 493332 40220524 ~ 40228831 (+) True AMCG00004256
AMCG00004268 mRNA downstream 81582 40811386 ~ 40824981 (+) True AMCG00004268
AMCG00004267 mRNA downstream 121427 40851231 ~ 40861765 (+) True AMCG00004267
AMCG00004277 mRNA downstream 167646 40897450 ~ 40904733 (+) True AMCG00004277
AMCG00004276 mRNA downstream 176588 40906392 ~ 40921474 (+) True AMCG00004276
AMCG00004278 mRNA downstream 208781 40938585 ~ 40940764 (+) True AMCG00004278
TU7800 other upstream 3722005 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 3830417 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 3947640 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 4447233 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 4955983 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 729772 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 1482706 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1958975 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5232206 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 7417084 48146888 ~ 48147156 (+) True G7999

Expression Profile