RNA id: AMCG00004272


Basic Information

Item Value
RNA id AMCG00004272
length 504
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00004272
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40718598 ~ 40721747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGCCATACATGTCAGTTTCacgtttattatttttgtaatttcgTATTGTTTAGCACAAGAcgttaaattaaaacataagcCCGCTGATCCTAAACCAGTTCGACTGTTCACAGACGAGGATTTAGCCAAATACAATGGGCAAGAGGAAGGCCAGCCTATTTACCTGGCTGTGAAGGGAGTGGTGTTTGATGTTTCTACAGGGAAAGACTTCTATGGGAAAGGTGCTTCCTATAATGCCCTGACAGGGAAGGACTGCACCAGAGCTGTGGCCAAAATAATGACTGTACCACTGGGTTTGCTTTTCCACTTCTCAAACCGACAGGCTGGACTCACTGATGAGCAGCTGGAGTCACTCGAAACCGTTTTCAGAGACGTGTACAAAGCGAAGTATCCGATTGTGGGCTACACAGCCAGACGCATGCTCAATGAGGACGGCAGCCCAAACAGGAGCTTCCGGCCTGAAGACCAGCCACAATTCAGCATCAAAGATGAGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8539 lncRNA downstream 22283 40675171 ~ 40696315 (-) True G6974
TU8499 lncRNA downstream 115783 40598954 ~ 40602815 (-) True G6939
TU8425 lncRNA downstream 591806 40126548 ~ 40126792 (-) True G6872
TU8389 lncRNA downstream 640315 40078017 ~ 40078283 (-) True G6838
TU8364 lncRNA downstream 684275 40020179 ~ 40034323 (-) True G6822
TU8593 lncRNA upstream 160061 40881808 ~ 40883167 (-) True G7023
TU8607 lncRNA upstream 194702 40916449 ~ 40921474 (-) True G7035
TU8690 lncRNA upstream 572429 41294176 ~ 41364065 (-) False G7104
TU8691 lncRNA upstream 583954 41305701 ~ 41364065 (-) False G7104
TU8689 lncRNA upstream 641866 41363613 ~ 41364065 (-) True G7104
AMCG00004274 mRNA downstream 3349 40710696 ~ 40715249 (-) True AMCG00004274
AMCG00004271 mRNA downstream 24811 40666125 ~ 40693787 (-) True AMCG00004271
AMCG00004269 mRNA downstream 58311 40652398 ~ 40660287 (-) True AMCG00004269
AMCG00004273 mRNA downstream 81122 40619930 ~ 40637476 (-) True AMCG00004273
AMCG00004262 mRNA downstream 182768 40453590 ~ 40535830 (-) True AMCG00004262
AMCG00004275 mRNA upstream 8068 40729815 ~ 40760889 (-) True AMCG00004275
AMCG00004270 mRNA upstream 79188 40800935 ~ 40811299 (-) True AMCG00004270
AMCG00004279 mRNA upstream 220348 40942095 ~ 40950517 (-) True AMCG00004279
AMCG00004281 mRNA upstream 232123 40953870 ~ 40966337 (-) True AMCG00004281
AMCG00004282 mRNA upstream 263993 40985740 ~ 40994592 (-) True AMCG00004282
TU8320 other downstream 869475 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 3349776 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 5304152 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 5754759 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 5825985 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 1654979 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 3799167 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 5585179 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 5746378 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 6162888 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile