RNA id: AMCG00004275


Basic Information

Item Value
RNA id AMCG00004275
length 2165
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00004275
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40729815 ~ 40760889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCTTCAGTCTGCTTTAACACAAtcaccatttttctttcttctccttttagATGCCCCTTCAACGGAACAGCAGGAGCTCTTCAGTCAGAAACTGCAGCAGTGTTGCATGCTGTTCGATTTCATGGACTCTGTCTCGGACCTAAAGAGCAAAGAGATCAAGCGGGCAACGCTAAACGAGCTGGTGGATTTTGTGTCTACGAATCGTGGCGTGCTGGTTGAGTCGGCCTACCCCGATATCAATAACATGATTACCACCAATATTTTCCGAACGCTTCCTCCAAGTGAAAACCCGGACTTTGACCCAGAGGAAGATGAACCAACCCTGGAGGCTTCTTGGCCCCATATACAGCTGGTATATGAGTTTTTCCTAAGGTTCTTAGAGAATCCGGATTTCCAGCCGAGCATTGCAAAGCGCTACATTGATCAGAAGTTTGTTCTTCAGCTCTTGGAGCTGTTTGACAGTGAGGACCCCAGGGAGAGGGACTTCCTAAAGACAGTCTTGCACAGGATCTATGGGAAATTCTTGGGGTTAAGGGCATTCATCAGGAAGCAgattaacaacatatttttacGGTTTATCTATGAGACTGAGCATTTTAACGGAGTTGCGGAGCTCCTGGAGATATTGGGGAgCATTATTAATGGCTTTGCACTGCCATTAAAAGCAGAGCACAAGCAGTTTCTGATGAAAGTTTTGATTCCTATGCACACAGCAAAGGGACTGGCTCTGTTTCACGCACAGCTGGCCTATTGTGTTGTGCAGTTCTTGGAAAAAGACCCCACCCTCACGGAGCCTGTTGCCAGAGGGCTGCTGAAGTTTTGGCCTAAAACATGCAGCCAGAAGGAGGTCATGTTTTTGGGTGAAATCGAGGAAATCCTTGATGTCATTGAGCCAACCCAGTTTAAAAAGATTCAGGAGCCCCTGTTCAAGCAGATATCAAAATGTGTCGCCAATCCTCATTTTCAGcgtgtgtgtttattttttgtcgTTTCTTTCAGGACAATTGTAGCGCTGGTGTACAACGTGCTGAAGGCCCTCATGGAGATGAACAGCATCCTGTTCGATGAGCTGACCGCTTCCTACAAAGCTGAAAGACAGCGggagaagaagaaggagaaggagcgAGAGGAGCTCTGGCGGAAGCTGGAGGAGCTGCGGATAAAGGGGACATCAGACCTGCAGAACAATAGTCACAGCCTGCAGAACGcccagaacaacaacaacaacaacaacaacacacgtGCCAAATGACACCGGACTCAGCCATGCCATACTGTCTGCTGGATGGGAAGTGAAATTTCTACTCTCTATTAGAGTTGTTGCAGAACTGtcaggaggaggtgggggaataaaaaaaagtaataaaaaaaaaacaacctcatcagtatgttaaaaataaatctatatagaaatatatattaaaaaaaaaaaaaggccaactATTTTTtggcacaaaaaaacaaaatctaagaTTCTGTggacttttaaatatatttttttggatgTTACAGTGTGGCCACAGTATATTTGTAACTTTTGTCTAATCATCgatttatttttgtcacttTTAGTTCTTTCACTGAGGATTAAACCGATTTTTATCATCGTTTGTTATAAGAGtgagggaaaaacaaatctgggtGTGGTGAGCATTATGACTTGAACATGTTTTGATTGTGCTGCACATAGATCAATTAGACGGCTATTTAAAgattttactattttatatgTGCTTTCCacactgcagccaacactggcGAGAGAGGAGTGCTGAGGGGAGCGGCAGAGATTCGGTTAGAAGCCAAAAGAGCGAGCAACCCTGTGTGGTCTTGTGTATTGGGTGTTTCATTTCTCTTTCTGATACGTTTTTGctactgtaatatatacaaGACGCACAGACTTAAATTGCAGCCATAAATTACCTATTTaagtattaattaataactGAGAATACAAATGGGCACAGagtttaattcctttttttccaGAATTAACCACAATCAATAAATGAGCTGATGTAAACAAGAAATGagccatatatatttttctccacTAAACTGTAAAGCACCtgagtgattttttttgttttgtttcttcttcttagtGGGTGTTGGGTCATCTGGTGTTAAAGACTGAGAAGCTGACCACGGGGGGGGGGG

Function

GO: NA

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8539 lncRNA downstream 33500 40675171 ~ 40696315 (-) True G6974
TU8499 lncRNA downstream 127000 40598954 ~ 40602815 (-) True G6939
TU8425 lncRNA downstream 603023 40126548 ~ 40126792 (-) True G6872
TU8389 lncRNA downstream 651532 40078017 ~ 40078283 (-) True G6838
TU8364 lncRNA downstream 695492 40020179 ~ 40034323 (-) True G6822
TU8593 lncRNA upstream 120919 40881808 ~ 40883167 (-) True G7023
TU8607 lncRNA upstream 155560 40916449 ~ 40921474 (-) True G7035
TU8690 lncRNA upstream 533287 41294176 ~ 41364065 (-) False G7104
TU8691 lncRNA upstream 544812 41305701 ~ 41364065 (-) False G7104
TU8689 lncRNA upstream 602724 41363613 ~ 41364065 (-) True G7104
AMCG00004272 mRNA downstream 8068 40718598 ~ 40721747 (-) True AMCG00004272
AMCG00004274 mRNA downstream 14566 40710696 ~ 40715249 (-) True AMCG00004274
AMCG00004271 mRNA downstream 36028 40666125 ~ 40693787 (-) True AMCG00004271
AMCG00004269 mRNA downstream 69528 40652398 ~ 40660287 (-) True AMCG00004269
AMCG00004273 mRNA downstream 92339 40619930 ~ 40637476 (-) True AMCG00004273
AMCG00004270 mRNA upstream 40046 40800935 ~ 40811299 (-) True AMCG00004270
AMCG00004279 mRNA upstream 181206 40942095 ~ 40950517 (-) True AMCG00004279
AMCG00004281 mRNA upstream 192981 40953870 ~ 40966337 (-) True AMCG00004281
AMCG00004282 mRNA upstream 224851 40985740 ~ 40994592 (-) True AMCG00004282
AMCG00004284 mRNA upstream 449502 41210391 ~ 41225185 (-) True AMCG00004284
TU8320 other downstream 880692 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 3360993 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 5315369 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 5765976 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 5837202 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 1615837 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 3760025 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 5546037 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 5707236 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 6123746 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile