RNA id: AMCG00004276


Basic Information

Item Value
RNA id AMCG00004276
length 8732
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00004276
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40906392 ~ 40921474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCAAACTGACACCCCCAAGGGCCAATCAGCGTCGCACATCCGAGGGCCCTCGAACTCCTCCACCAATCACAAAGCGAAGGGGCGTGCTTCGGGACATCTCCCTGTTCCGTGTGAAAACTTTGCCGGTTCGGGTGCAAACTTTCAAACCGTCTGCAAACAACAGCGGCTTGTGGACCGGGCAGCCGTGCGTCGTGTTCCCCCGAACCTTTtccttcattttgtttcctttcattgaTACGGAACAGCTCAAGGGACGCACAGGGACACCCCTAAGAGGACATCTTCCCCCCCCCCGTCCTAACAAAGCGTTCAGACACATCGATAATGGAAGCGCTGCGAATCGGTCTCTGATTGACAGCCGGCAGCCTCGGTCTCTCCTGGCTGGACTACGGTAACCCGATGGATCCATTTCCCGGGAATACAGATACGCCGATTTGAAACCTAACCGATCTGACCATTCTTTCGTGAGatccgtgtttttttttttcttccatcacCCACCCATTCTTTATGTGCATCAATTAAACACAACTCTGCGCTGAAGTGTTTCGCCCATTTCTCCTCGTTTTCCGCTGGAAATGCCTGGCATTGTCTGATGGTCCTCCCTCGCCGCACGGCTGAATTGTAGTGGAAAGCGGTCGGGAGACGCCGGCGCCTCTGCAGCGGGGAAGATGGCTTGCGAGCCCAACCGGGTGCGACTGCTATGCATGCTGGCCTTGACGTCCGTCTTCTTCGTCGTGGAGGTGGTGGTCAGCCGAATCACGCAGTCGCTGGCCATGCTGTCGGACTCCTTCCACATGCTGTCGGATGTCATCGCCCTGATCGTGGCTCTGGTGGCCGTCCGGTTCGCCGAGAAGACGCAGTCGACCAGCAAGAACACCTTCGGCTGGATCCGGGCGGAGGTGATGGGCGCCCTGGTGAACGCCGTGTTCCTCACCGCGCTGTGCTTCACCATCGTGCTGGAGGCCGTGGAGCGCTTCACCGAGCCGCATGAGATCGAGAACCCGCTGGTGGTGATCGGGGTCGGGGCGGCGGGGCTGCTGGTCAACCTGCTGGGGCTGTGCATGTTCCACGGCCACGCCGGCGGGGGCCACGGACACTCACACGGGGGCCACTCGCACGGGAGTAAGAAGCACAAAAGGGGCAAGATGGGCAAATGCGACAGGCCGTCCGGCAATGGGTCATCATCGGGCGAGGAGACCAATAACCTGGTGGGCAGCTGCAGCAGCCCCAACGGAGTGACCGCTGACAGGCCGGACCGGCACGATCTGCTGCAGGACAACAGCCTGGAGGTGCAGATGAACGGGATCACGCCCTACGAGGAGCTGGAGCCTGGCACTGACTCAGGCTCGCAGCTCAACATGCGGGGCGTGTTCCTGCACGTGCTGGGCGACGCACTGGGCTCCGTCATCGTGGTGATCAACGCCACCATCTTCACCTTCGTGTGGCGGCCCTGTGATCCCGAGCTGCCCTGTGTCAACCCCTGCATGGATAGCCACTGCACGGATCATGAGCACATCAACCACACGCTGGTCAGCCTGCTCAACAACGGCAGCCAGACGGTCACCTCGGCCGGGCCCTGCTGGGTGCTCTACCTGGATCCCACACTCTGCATTATCATGGTGTGCATCCTCCTCTACACCACCTACCCTCTGCTGAAGGAGTCGGCGCTCATCCTTCTGCAGACGGTCCCCAAGCAGATCGACATGCACCGGCTCAATGAGAAGCTGGGCAGCGTGGAAGGAGTGCTGGCCGTCCACGAGCTGCACATCTGGCAGCTGGCGGGCAGCCGCATCATAGCAACGGCTCACATCAAGTGCCAGGACCCCGCCTCCTACATGGACGTGGCAAAGCGCATCAAGGACTTCTTCCACGACGAGGGCATCCACGCCACCACCATCCAGCCCGAGTTTGCCACCGTCAACTCTGAGTCCCGCATCTCCCTGTGTGAGCTCTCCTGCCGGACCCAGTGTGCCCCAAAGCTGTGCTGCGGGGCGGCTGACAAGGCTGCCCTGGGCCCAGAAAAGAAGGCTGGGGACAAGGCCGTGGGCCTGCCCGACGCCCGCCTGGAGATCATCAACGAGTCACCTGAGCACGTCTCTCGGGACCGAGTCGCAATGGTTGCCATGCCAGAAGTCAGCCTGAGCGAGGTGGAGTCGTCGCTCTGAATATACCTCCgagagagggggcgggggggttgcAGGTGAGGGGGCACATGCAGTGCAGCTCTCTGTGTAGGCCCTGAGTGTCGAGCCAAACATTCACCCTTCATCTCAGCCCGTCATTGCAAATGGGGAACCTCCCGCCCCCGCCTCTCCCTCCTGCAGCGGTATGGTCATTCATGTTGTCACTTCACAGACGCGTGGTTAGAAACTCTTGCATGCGTTTAATTATCACTGCTTTGTGATAAGCTGTTGGATGGTGTAATCGTGCCAAAGCCTCTCAACACAGGATTTCAGGACTGTTCCACTGTTGTGACAACCAACCAAccataaaaacatgcaaaacaaaggTTACCAGTCAAGAAGACTACATCACCCAGATAGATGGCATCTGCTTTACTGTAGACATATTTTCATGTGAACTTTTCTGAATAggtataaaaatgtttttagtagGCTTGGACAATATCTTTTTGTCAGACTTTTTAGCCCATGtatgaaaagttattttatatgcatataaaataatttatgtatttaattacatttattaggattggattttttttccactagGTATACATCaatttctccctctcccacGTAAAGGTATTTGCATCAGTAGAGAAGATGACGAAACTGATGTTTCTGCCCTGTTTCAGCATAGCGCAGATTCTGTGCTGGACTGTGTATTTTGTTAGGtactgattttttgttttgtgttctgtttttcagttttgtctggtaattgaattgtgtttaaaaagttTAACTATTCTTGATGTAGAAGACAAGGGAcaacttaaaacacattttaatgtagaTTCTTATTCCAAATAGCActttttggaaacaaaatggCCTCATAAAACATCATGTATAGAGGAGCTAAATGAGTTCTCGTCacagtgaagaaacaaaatgctaaCAATTACTGGAGCTGCAGTGAAAGGCAGTTTTTCCTCTCTGACAGTTATGTAGTCATGTGCTGTTCCACCATGCAAGTGTTGGCAACCCTGTGAAACTCACAGGCCATGCGGTAATATACCAGTGATGGGATCTAGGAGCCTGTGTGTACCGAACCCGGTTGTTTTTCAAGGGGTTTGATATTAATATGGATCCAACGTACTAGGAGCTGTCAATATTctgccattttatttcatgGTTGTATAGGGGGGGTTCTCCACATTCAGTTTATGCATTGTAGAGTTAACACACTGGGACTGCTAGGACACTCCTGTGCAGAACACCCCCTTGACAACCACATGATCTGTTGCCGCCTTGGCAACTGGATAAATATTCAATATGTTCTCAACTGAAGTTATGCAGGGGGGTGCCTTCTAGTCATATAGGTCTCggaaaacaatgtataaaaaaaaccGATATACGTGGTATAATTTAAGCCACTGTTTTGTGTGAAGCCAGCCTTGTTAATTGCAAAGTTGCCAGTATGTGTTATATGATGCTTGAAACCCCCTCACTTTTGCATCCTAGAGATAGATTGAATGCTATTTGCTATAAAAGATTTCATTGGTAGCAAGCactttttagtttatattttgttagttttgttttctgcagtgaTCATTTCCCTGCATCTATAAAATACAGGCCGCGTTATTGAGATCTAATAAAGCACCTTGTCATTGTGGAAGGCTAGTGTGCATTTGTGCTGCACGCTCCGAGACTCCTGTACGCTAAAGTGAATTACAGAGTTATTAGTCAGTTTCTGCTgcgcaagtgcaaacaaaacaaacgcaATGTAATTTCAAAAGGGGCCATTGTACATCTGTTTAACAGTGCCATTAAGGCGCCTGCCTCTCATTGCAACACAGTGTTGGAAGGAGTCAGGACTTGTCTGCACTGCTACCTTCTGTGATTGACAGTTAATGAGGAGCCATCATAGGAGGAATGGAAGGACAAAGCTATGtacctttttacatttttttttgtgatgaGGACAGGCCACCAACAGAAACAAACTGGACAGTTGTATAGTGGGGGTGTTTGTAATTGTAACTGATCCCTGCCCCGCTGCTTCCCAAAACCAGCCCTTACGTAAGGGGCACTACAAAGCATTCCACAGCAGCTCGGTACGACGCTTCGGCCATCTGTCCTCATTATGAATAGAGATGGAAAAATAGGTCTGGCTGGAAGGGGGAGGGATCAGTTTTCCTTTGTAACTCCAGCTTTTCCAGGGGTTAACTGGATTAAATCGCAGCGTGTTAAACAACAGCTTTAATTTTCAAACCGCAACTGCCTCATtatagtcattttattttaatctcgcaagaatatttttttcctgtccaTTTTGTCCTCCACCTGTGCATTTTTAACtggagttttatttaattttaaacccatATTGATCGTCATTTTTAGTAAATGCAGTGTGGTGCCTGTCTCCCCCACCCCATCCCAATCCCAACCCCATGTCCACACTTCTCTGGTGTTGGAATTGGAGCAGCTGGTCCAGATGGACAGTCCTAATTCAGCCTCTTCCCAGCACTCCCTGTGTGGTTGGTATGGTAGATTCTGAAGTAACCATGagatggcattttatttttattttatctagaTACACAGCCAGTGTAGGAGAAACGTTGTTTCTGATCTTCCATATGTATGAGTCATATATAAAGGAATTTCCCCCCCAATAAACCACTATagcaaaagcattttcaaaatgtactgtCAGGTTGTCAGGAAGCTGTGTGTTCTTGCCCATTCTGCAGTCTATGCTATATTGTGAATAGAGTCCttatgaacataagaaatgcatcaaccccccccacccctttgaAATGATGAAGCATAtgcaaaacactgaaatgcatttatgcTTCTAAGAATAAAAGAGAAGGAACAAAAAAGATTTGGGTGAAAATGTCTATTTCTTGTGCtatgtgaaaataatgctgCAATGTTTTCTCACTTCCTAGTTTTTGGATCCAGGGTGAAAAATGTAACCGTGGTTAAATGTCTGTATTCCTAGGTGTTAATCCTTGTGGGGTTTTATATTGTCAAACTTGAGATCATCTCATTTTGCTTTATGTTCATATTCTGCCATAATTTCTACAAAAGCCAACATTGCaaataacctttttatttttacctcagCAATTTCTGTAGTTACTCATGAATACCTTGGGTAATCCTGGTGACACTCAGTTAGCACAAGAAGTGAGATGCAGACAGTATACATGATCAGCGTTTTGGTGCTTTGTAGCTGTGTGTGCATCGTGAAGTATGTGTTCTGTGTTCCTGCCTTGTGTTCTTCTGCAGCCCAGTCCTTTAGAGTCGGAAATGTATCTAGTTAGACAAGTCAGCTGAAGACAGTCTTTGTGGTCTGTTACAACGTCTGTTATTCTGTTTGGAGTATCTAAGCTGTGCTCTGGCTCAGTAGATTTACAATATATTCTGCTACGTTTAGTAAGATACAACTATCAATGTCTATAAACCACAGCTGGGGTGTAATAAAATGCTAaactattttgtaaaataaaataattgtcatgGCAGATTCAAGTAAaatgttactactactacaccagtactcactttttttttttttttcacttatcaTTCCTAGATTTAAGCCAGGATTATGATGTTTTAGAAATATTATATTGGTTATGTACTCCTGTAAAGTTCAAAGAttgacaaaaatgtatgttgcaccaccaaattgtttttttgtttgttttctttcctttattgtttgtttcctcaTTGATTATGCAGTAAATATTTAGAGAAAAGTGTCAATGAAACTACTGCTTTCTGAAATAATTCCAATAGATCATTTAACTATCCAGGtatgattataaaaaaacaaaaaatctctctcctaaataaaaatgaggtagttatttaaatgtcagtggTGAGTCCTCCTTGCTTCTGAGTTTTGTAGACTGATGTCAAGACAGAATCTTTTCAGTTCTGTTAAGAATTTTTCTAAGGATTTTTTATCTCCGTGTTTGGATATAcactttaacattgtttttatgttcacAAACCTGGTGCTTTCCGAAGAAAATATATCTGACTGACCTGGAGTAGAATTCATGATTctgtgatgaaaatgttttatccCGTTAACAAATTGAATCCTCCACTGTTTGATTGGCCTCTGCTTTTATAATATTGACCTATATTCGGTTTACAATGAGGCCTCAAACAGATGCCTTggtcttctggttttctttcTGCTACATAACTACTACacttagtttgtgtgtgtgtaagtgacGTGCGGGTGACACCTTACCAGTGCGTGTCTGTGCTGGAGTGGCTCAGAGGAaaggcagagaaaataaattcatCAGAACTTGGGTTCATATGCCCACACAATTATGACAAGAGCTGGTTAAGGACCATGTATTTAGAGGCCATGAATgcaaatactaatatatatatttttaatgttctacAACCAAGGTATTTTATCtggtgaaaggaaaaaaattgcatttattgcaGTTGGAAATGGAATGTCTGAATCCCCCCATCCCTTTGCGTTTCCCGAACGGTGTTCGAAGGCCGCACTGAactgcagagctgtgtgtgagtgtgcctTCCCCACCACATTGATTTCTGAGCTCATGGTTAGATttgcaatatgtttaaatgtaaaaacatctgTGACAGTGGCTTGTATTAACCCATAAGCAAACCTGTTATGTCAAGATGAATGCAGGCTTTTTGGCCCATTTGTTGTGTGTTACAGTTCATTCTGATGgttatttacttttactttttaatccCCCTGGACTGTGCTCCTTCAATTtaagtgtatttatgtatgtaagtaatacatatattcaatatgtatgtgtattttattatttatatggtGAATAACAAGCTTGTCATTTCAAAATCTTGAGGTGGGGTTTATGCTGTGACGCTTCATCTATGTGTGTGGTCATTTTTGGTATTGACAGTACTGATACGAGAAGAACATCAACTAGTTCATGCATTAAAGTGCATAGGAATTAAACTCAGCTGCAcccatttataatttaaactaaACTTGTGTAATTTAACCAGTTGTCCTTAAATTATCCAacctccaaaataaataaatacaataattgaaactaaaaataattgaaGTCACAATTTAATGTATCTTGATTCAGTACTTTCACCCTTTAGGTTAACCGCCAGTTATTGATTAACTGTTATGTTTTAATCAGTATGTCAGCATAACTTTTTGCTCTTTACACTTGCAGTGAGTGCAAGGTAAAAGATACAGGTTTACAGCCTATATCATGAATCCAGTTCACTGTAGATCTGTGGAGCTGTTCTTTCTTCTCAATCTTTACTCTGCACTGATAGTTGCTCTTTAATGCAGCGCTGCTCAGCACGTGAAAGCAAACTGTACTTATGTGGTCATGTATTTTGCAGCTGTGGTTTAAGAGGACAAACTGTAAATCTCACCACTGTCTGCACAATAGGAGAGTGCTTACTTCTCCAGTAGTACTGGTAGACCTGCGGAGGTCTCTTAAACCCAAGACCTACTAGTGGACCTGTAAGAGACCCGACCATTTGTGCAGTTTAAATCTGTACAAGCCACACAATACTGAATCCGAaatttttggttttcttcctCTGTAGTGCATAGTACACCGACCGTGGGGTCTGCTATTCTGTGCTGTGACTGTGAATGTTTTCATAACTAGTAAAGCTGtactattttgttttcaataagtGTTGACAGTCCTgctttttgtactttgtcatcctttgtgtgagaaaatagaCCTTTGCATTCAGGCATTCTATCTGGTCACCTAAAGCCAACTTCAAGGCCCTGCTTATGTTAGTCTTTATCTTCATGCAGATAATTGACCAACATGCTTCATGTGCACTTACACTGACATCGaggcagaaacacaaaaaaaagtgtccttCACACACAACACCTAACACAAGGTAAATGCAATTCCCCTGAAGTCCTACTTTCGACAATTGTATAGAAGATAAATGTGGTGATTTATTGTGTCAAAGGAACATGATTAACTTTCCTTTGCTGTCTGTGATTCAATTTAAGCCAGTGTGGTGAAGAGAGGCATGCACAAGCTGATATTATTACTGTGCTTTGATTGAAAAACTGTTATTGTGGAGATTGGTTTGTATGGTCAGTGATGTTCATTTACAAGTAGTGAAATGAAATGacagtgtaataaatgtaatgaaaacctATTTTCTTAAAAAGGGTAGATTTATTTCCACATCTTTACATTATTAGCAGCATATATTCATTACAATGATACAACACATGTAGGAAATTGGcatattcatgttttcaaaatgatacTCTGCAACTCACTGCCCCTTACATACATGACCTCAAAGATAGTGCAATGATTACCAggatatgaaatatgaattccTTGGTCTATCaatccaatttccatttattgtcttttattatCACATTTCATTGAACATGCTTCTATGTAACcattttttcattcattgcACTTTCTACATCTATAATTTCTTTTCCAAAATTGTCTCCTTCACACTTTCCAAATGTCAGATTTATTCCGTG

Function

GO: NA

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8456 lncRNA upstream 565184 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 707430 40148962 ~ 40198962 (+) True G6850
TU8398 lncRNA upstream 792441 40110200 ~ 40113951 (+) True G6847
TU8391 lncRNA upstream 817478 40088608 ~ 40088914 (+) True G6840
TU8360 lncRNA upstream 872069 40020076 ~ 40034323 (+) True G6819
TU8623 lncRNA downstream 56525 40977999 ~ 40978319 (+) True G7048
TU8658 lncRNA downstream 373824 41295298 ~ 41364066 (+) True G7078
TU8666 lncRNA downstream 445671 41367145 ~ 41368478 (+) True G7084
TU8687 lncRNA downstream 601579 41523053 ~ 41529308 (+) True G7102
TU8686 lncRNA downstream 683636 41605110 ~ 41606759 (+) True G7101
AMCG00004277 mRNA upstream 1659 40897450 ~ 40904733 (+) True AMCG00004277
AMCG00004267 mRNA upstream 44627 40851231 ~ 40861765 (+) True AMCG00004267
AMCG00004268 mRNA upstream 81411 40811386 ~ 40824981 (+) True AMCG00004268
AMCG00004266 mRNA upstream 176588 40722163 ~ 40729804 (+) True AMCG00004266
AMCG00004264 mRNA upstream 288202 40606454 ~ 40618190 (+) True AMCG00004264
AMCG00004278 mRNA downstream 17111 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004280 mRNA downstream 79173 41000647 ~ 41011758 (+) True AMCG00004280
AMCG00004286 mRNA downstream 455394 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004289 mRNA downstream 543473 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004291 mRNA downstream 621602 41543076 ~ 41550969 (+) True AMCG00004291
TU7800 other upstream 3906234 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4014646 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4131869 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 4631462 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 5140212 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 538102 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 1291036 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1767305 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5040536 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 7225414 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034256 True 2996 mRNA 0.48 2 NC_007131.7 13894123 ~ 13913790 (+)