RNA id: AMCG00004277


Basic Information

Item Value
RNA id AMCG00004277
length 3799
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00004277
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40897450 ~ 40904733 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTTTCCCGAAGCGGCCAATCAGGATGGCGCATGAAGGACACCAATTTTAAAGCTTGGTTTCCTGGTCTTTGCCGAGCGTGCTGGTGTTATTGTGAAACGGAACAAGCGGGCGccgttttttttaaagtattgtttttaaaaggtcacTAATGCGTTAAATGAGTTACTGCAACACAAATATCTAGCCGTACACCGGAGGTTAGAGTTTCGGTTCGCCTTTGCAAAGAGCCAGCTGCGGCAATGCCTTCCCGTGTGGAGGACTACGAGGTCCTGCACACCATCGGGTCCGGGTCCTATGGCAGGTGTCAGAAGATCAGAAGAAAGGCTGACGGAAAGCTCCTGGTCTGGAAGGAGCTGGACTACGGCACCATGACGGAGGCCGAGAAGCAGATGCTGGTGTCGGAAGTGAATCTGCTCCGGGAGCTCAAGCACCCTCATATTGTCCGTTACTATGACCGTATCATCGACCGGACCAACACCACGCTGTACATCGTCATGGAGTATTGTGAGGGGGGAGACCTGTCCAGTCTCATcaacaaatgtgttaaagagAGGCGATACCTGGATGAGGAGTTAATTTTGCGAGTCCTTGCTCAGCTGGTTCTGGCACTGAAGGAGTGCCATAGACGCAGCGATGGGGGGCACACTGTCCTGCACCGCGATCTCAAGCCTGCCAACATCTTCCTTGACGTCAAACAGAATGTCAAGCTTGGAGACTTTGGATTGGCTAGAATATTAAATCACGACACCAGTTTCGCCAAAACATTTGTGGGAACACCATATTACATGTCCCCGgAGCAAATAAATCGGATGTCTTACAATGAGAAATCTGATATCTGGTCTCTTGGATGCTTGATGTATGAGCTTTGTGCACTTTCACCCCCGTTCACCGCCTATAATCAAAAGGATCTGGCTGAGAAGATTCGAGAAGGGAAGTTCAGACGGATTCCTTATCGATACTCCGAAGACCTTAACGCTCTCCTGTCCAAAATGCTGAATCTGAAGGATTATCTGAGGCCGTCGGTTGAGTCGATTATTCAGAACCCCCTGATCGTGGATGTCGTGGCGGAGGAGCTGAGGAAAAACAGCGAGCGCAATCGGAGGAGGTCCACGGAGGCCGAATCGCCACAGCCTACAGACTTATCCGCGGCAGAGCAGAGACTGAaggagcagcagctgcaggccCGGGAGCGCGCCCTGAAAGAGCGGGAGCAGATGCTGGAGCAAAGAGAGCGAGAACTTTGTATTCGGGAAAGGCTCTCGGATGAAAAGCTTGCAAGgGCTCAGAGCTTGATGAAGAACTACAACCAGCTAAAGCAACAGAAGATCCTCTCTGAAATCTATTCCAATGCACTAGCAGATGAGTGTGAAGAGAACCCTTCACCTGGAAAAAAGAAGGTCCATTTTGCTGGAGACAGTAAAGAGAACAGGAAACCCGACAAGCTGGCAAAAGGCAAAAACCAGGAGCTGAAGAAACGGTTGCAGGCAGCAAATCTTCGTGCTCAGGCCCTGTGTGAAGTGGAGAGAAATTACCAGTTCCAAAGCAGGCAGATCCTGGGCATCCGTTAAGGGATGAGCCACGGCATTCAGTTAGGTAGTGGACCATGAATGTGAATTTGTAGAACTTTTTGTTTTAGGGTATGTACTGTTTTAACCTGCTAATAAGTGATGTTTGATTGTATTCCTCATAACATGGGGAACATGTTAAAACAACTTATGtggtggatggatggatgaagtattttgttttcagtttttaataagCAGCACAGGATCATTAAAGTTTTTAGTGGAGTCatgaatataaatgcatacTCCCTGCTGTAAAATGCAATAGTTCACCTTTTTAAGGTGGGGAATTGACATCATGAAAGGGCTGTGTTCTGTTACActtatgattttaaattgtgtgtacTTTATGGTCTGTAAAGTATACTCTTCACCTGCACCTTTTATGTTCCTTTCTTAAAGTTCAGCAGCTTTTTCcaaatgtaatattgttaaCCCCCTTTTATTGAGGACATTTTATGAGTATGGATGTCTGAATCTTTTATTAGCTTCAAGGTGAGGTTTGTGACTTTGCAGTAGAAGATGGATTGGTTGCATATCATGTTCATCTGACCAAATCCCTTGGCACTAGATCATAATTTGTTTGCAACAGTCTTAATTCTAAATGCATGAGAAACTATTGTTTGTGGTTGGGTAGGTGAGAAAGTTAAAGGACCGAAGGCCCGGGGGGGTTGCATTAGCAAACTGAGGGCAATGTTTGAAACTACTGAAAGTTTTTGTAAGTGTAAGAAGAGTGTGGAGAGAGACTTAACAATTTCACCAAAGCATTTGTAAAGGACTTAATCCTTTATAGAGTAGGGCAAACTAAAACCAAACTACAGCACcctttctatatatttattttgattcacTAGGGCTCAGAATATCTTGATTAAAGTTGTAGGGTacttcccccccccacacacacattccccTCTCTCTGAAGTTTGATTAGTTTCAAAGTGACACTAAAATCTGTAAGTCTGACACTGATGTGTTTGTTCATCTAATTCCATTAATTTGATCAATTTTAGCATAGGAGAACACCTACTAAACTCTTCCTTTGCAGCAcactatataacatttttttttacacctggGATAATGTGTTTGTGGACAGTGAGATTCAGTTCTTGTAGCTGATGATAGGGGCTTTTTTTCAATTATCTATTGCAAAGACaggattttatttccttcatacttatttatatatggattacagGTGTTATTGTTAGAATGTGAACCACTTCAGTTATCAGGCTCTGTGATTGATCTCAATGCTGTGTcctttttaaaaggaataacatttatttttgtatacaaatgtatttctggAAGAGACATTAAtataatagtttttcttttttctttgagtAATTAAAAGGCAAacttcaaatgtgtattttttcctaATCTGTAACAATAACAGTTGAGTGCCACAAGGTGTCTCCACTccacaaaacaataatttactGGAGAGTAATTTAAAGGGCTTAAATCCTACTTTGCTGCTTGATTGATGATTAGAGTAATAATGACATTCAAATACAGTTCTCCTGTCATTCATAAGAGAACCAGTGGTTCAGTTTAAATTGAACCAGGAGAAACAACACCTTGTGTTTCTCATAAATAAACAACCCTTTTCCTAATGAGGGTTGTTTCAAATACTGTAGTGCGAGTCAGTAGAAGGAACGGGGTGAGAGCTGGACTCAAATAATGCTCCCAAATGTTCCCTTATTAATAAGATGCCACCGCAGACGGTCATAGGCAATGCATAATATCGACGAGGGGTTCCCCACATTTTCCAAAGTCCTGATTTAGAAAATCAAGTCCCATGAAATGAGGTCTACACTGGTGTAGACAGGTGACTAAAGAGATCGTTTACATGCATGTACAATAGAGTGGTTCTTCTGGATTCAATGTACTTactgtacatgtgtgtttgatgcagctgtgttgttgtttttttttgtttttttatatttttttccagacacAAGCGTCTGTCTTTGTCAGTGCTGAAATACATCGAGGCAATAGCGTAAATAACAGTAATGTGCTCGAATGGTCAAAAAGTTGATTTGAAATGGTCATGTGACTGGTTTCCACTTGAAAGATGACAGAGATCATGCTCAGCTTGTCAGAAAGATGAATGCCTGGTTTCTGAACAGTGTGTTTCTATTACGACTTGCCATTTATTACATCTCACAAAATATTCCTTAGTCTAAAAGCAGAAAGGGAATCGGTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K20872 NEK2; NIMA (never in mitosis gene a)-related kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8456 lncRNA upstream 556242 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 698488 40148962 ~ 40198962 (+) True G6850
TU8398 lncRNA upstream 783499 40110200 ~ 40113951 (+) True G6847
TU8391 lncRNA upstream 808536 40088608 ~ 40088914 (+) True G6840
TU8360 lncRNA upstream 863127 40020076 ~ 40034323 (+) True G6819
TU8623 lncRNA downstream 73266 40977999 ~ 40978319 (+) True G7048
TU8658 lncRNA downstream 390565 41295298 ~ 41364066 (+) True G7078
TU8666 lncRNA downstream 462412 41367145 ~ 41368478 (+) True G7084
TU8687 lncRNA downstream 618320 41523053 ~ 41529308 (+) True G7102
TU8686 lncRNA downstream 700377 41605110 ~ 41606759 (+) True G7101
AMCG00004267 mRNA upstream 35685 40851231 ~ 40861765 (+) True AMCG00004267
AMCG00004268 mRNA upstream 72469 40811386 ~ 40824981 (+) True AMCG00004268
AMCG00004266 mRNA upstream 167646 40722163 ~ 40729804 (+) True AMCG00004266
AMCG00004264 mRNA upstream 279260 40606454 ~ 40618190 (+) True AMCG00004264
AMCG00004265 mRNA upstream 298616 40570960 ~ 40598834 (+) True AMCG00004265
AMCG00004276 mRNA downstream 1659 40906392 ~ 40921474 (+) True AMCG00004276
AMCG00004278 mRNA downstream 33852 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004280 mRNA downstream 95914 41000647 ~ 41011758 (+) True AMCG00004280
AMCG00004286 mRNA downstream 472135 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004289 mRNA downstream 560214 41464947 ~ 41517390 (+) True AMCG00004289
TU7800 other upstream 3897292 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4005704 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4122927 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 4622520 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 5131270 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 554843 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 1307777 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1784046 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 5057277 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 7242155 48146888 ~ 48147156 (+) True G7999

Expression Profile