RNA id: AMCG00004279


Basic Information

Item Value
RNA id AMCG00004279
length 2652
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00004279
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40942095 ~ 40950517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgGCAAATGGCTGTGTCCAGTCGTGTATGCGGATGTGTAGTTTGTGttcatctttatttttggaTGTTATTGTTGACCAGGGACCAGTTAATCGCCATATAAAATCAATGCACTCCCACATAAACAATAACGTAAAATATCTTACACCAAAGTCTACAGTTTATATGGTGTGCTCGTATAGataTGGATTCTCAAGAAAAGGGAAGAAATAAGTCCACTTCTTCAGTGGAGGAGAGAGGTGCCCGGAGCAGAGgaaaggaaaagaagaagcGGATACGCAGTCCCAGCAGGTCCTCCTCGAGATCTTCCTCTAGCTCTTCGACATCTTCGTCATCGTCCTCTTCTTCATCtgtgtcctcctcctcctcgcgcAGTAGAAGCCGCTCGggcagctccagcagcagcagcagtgGTTCCCGTGGCAAGTCCAAGGccaggaaaagaaagaaggaaaaacaacataaaaagaaagtaaaaaaagataagaagtacaagaagaagaaagacaagaaaCTGAAACGCGAGGAGACGGAGAGTTCGTCTGGACCAGTTCAGATCTCAAAGTTTTTGAAGGATAAGAAGAAAAGAGACAAGTACAGCATGATTTCAGGGAAGAGgattaaaatgaaagtgaaaaagaCTAAGAAGGACAAACAGAGAGACAAAAACCGCGCCGAGCTGTTGGAATTCCTCAATTCTGCCTTTTGACTCGAGGAACATTATgaagtagttttttttccttcacatttTCCACGTTTCAGGAGTCCCACTGTGACAAGCTAGAAAACAAACTCAGGGAACTTTTAAAAACCTGTTTGCCCACCTGAACTATTGACCTgcgttttatttaaattttcccagatgtttttgtttttagttaccCCACACCaagacagaaaaagagaaaataatggaaatatcataatcataatataagtataccccaaaaaaaaaaaaatgtttcttcatttttttcaccCCATTTTACAATTGTCTGGCCAATTACCAATTTTTGCTGAATACTTTGGTGATAAATTAGGCTTGGCAACAATTGGGCCAAGCAGATTATTAAAGAAGAAGTAAAGCAGAGTGTGTGTAAGCTATTCAATGTGCAGCCCTGCCCTTTAATTTAGTTATATCAATTAGTTGCAATTAACAGGTACTGAACCCCTTCACCAAAGccagtctttgttttttcttcttctacaaAGAGATCttattaatattcttaaaatatatccttataataatcaatatataatattgaaagTACCACAATATGGGATTATGTATCGACACTGCAGTTTACTGTGCTGTgcaaatgtcaaatgtttttttatttttattttcacagctatagtggaagaaaaaagtacaaatgttGTGAGCGTTATTTAATTGTCaattatttccccttttttcttttaggtTGATTTCCTTTATGCAGAATTGTTGAccaactaaattaaataagctTCATGATTGGATTTGTCTAGGGTTGTTTGCCTTAGAATAGATTTTTGGTCGATTGTGTATTTGAGCTTGGACATAACACCCTTGATTGTTTTAGATGTCTTACTTTCCTCTCTTCATATTGAACGATTCATACAGTAAACCCTAACTGTCCACCTAAGTCCTGACTTTCAAAcctttaacttaaaaaaagatttatagtagctgtgcttttttattatgtttgtgtgatttatttcagttataatTATTAGTCCTCCCTCCTCAGTATTGGGTTgctacttttttcattttggacTTTAATTTCACTCGCAGTCAATCCTGAACCTAAAGGACTAAAgcttaataattttaaaaatatatgaaatcttaaaatacatgtgtACAAAAGAACTCTGCTCCCTATATATGACtgtactttttatatttttatgctATAAGAGCAGCTGATGTCAAGATTCTTGGTTCTGATTCAGTCACTGACTTGCCATGTGTTTACTTGAGCAATTAAACCTCAAGCTCATACTGTGTGTCAGTTAACCCTTATTTTCTGTTGTGAAAAGAAGTGATGGTCCTGCAAGCGGCTTCATTGGAACCTGGTGAGTTTGAAATAACTGGGGTCTTGGAAGTCAATCTGTGATAAAAGACAATCAACAGATGCCACATGGGGTCAGGAAGGGAAACATAAATTCACTTCCAGTATTGAACAAACGGTccattagtattattgttaggGAAAGGCGAAAACAAGTGTTTAAGGTAAATGGCCATCAGAGGAAAGCGACAGGGAGTGTGCCTCCTGATTTCTCTGCTGTCGAACCATATCATTATTAAACGCTCACATTATCCACCAGGAAGTGCTGGACTACAAAGGAAATATGCTGCCCACGGCAGAACTGTGGTTCCTGACTGACAGAGCGAGATACAGATTACTCTGAGCACCACTGCCACTAATTCATTACAATTACTGCAAGTCATCTCATTAATGTCCTGTGGTGTAAGAAccttttcaatacaaaatatctgCATTGTAATCATGCACAATCTCATGAGAAGGGCatgtgtttttatgattataatttcagtttaaaggGCCATTTCAAGAGTAGACAACCCTGATTGTGgtctattattttaatatgacattTGTTGGTCATGGAATTTCCCGTGCCAAGTGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8607 lncRNA downstream 20621 40916449 ~ 40921474 (-) True G7035
TU8593 lncRNA downstream 58928 40881808 ~ 40883167 (-) True G7023
TU8539 lncRNA downstream 245780 40675171 ~ 40696315 (-) True G6974
TU8499 lncRNA downstream 339280 40598954 ~ 40602815 (-) True G6939
TU8425 lncRNA downstream 815303 40126548 ~ 40126792 (-) True G6872
TU8690 lncRNA upstream 343659 41294176 ~ 41364065 (-) False G7104
TU8691 lncRNA upstream 355184 41305701 ~ 41364065 (-) False G7104
TU8689 lncRNA upstream 413096 41363613 ~ 41364065 (-) True G7104
TU8704 lncRNA upstream 434203 41384720 ~ 41386556 (-) True G7115
TU8708 lncRNA upstream 509292 41459809 ~ 41460321 (-) True G7117
AMCG00004270 mRNA downstream 130796 40800935 ~ 40811299 (-) True AMCG00004270
AMCG00004275 mRNA downstream 181206 40729815 ~ 40760889 (-) True AMCG00004275
AMCG00004272 mRNA downstream 220348 40718598 ~ 40721747 (-) True AMCG00004272
AMCG00004274 mRNA downstream 226846 40710696 ~ 40715249 (-) True AMCG00004274
AMCG00004271 mRNA downstream 248308 40666125 ~ 40693787 (-) True AMCG00004271
AMCG00004281 mRNA upstream 3353 40953870 ~ 40966337 (-) True AMCG00004281
AMCG00004282 mRNA upstream 35223 40985740 ~ 40994592 (-) True AMCG00004282
AMCG00004284 mRNA upstream 259874 41210391 ~ 41225185 (-) True AMCG00004284
AMCG00004283 mRNA upstream 287910 41238427 ~ 41248474 (-) True AMCG00004283
AMCG00004285 mRNA upstream 416284 41366801 ~ 41374949 (-) True AMCG00004285
TU8320 other downstream 1092972 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 3573273 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 5527649 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 5978256 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 6049482 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 1426209 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 3570397 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 5356409 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 5517608 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 5934118 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile