RNA id: AMCG00004280


Basic Information

Item Value
RNA id AMCG00004280
length 1806
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00004280
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41000647 ~ 41011758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAAGCGCTATGTGGACGCCAGCAGGCtcaggaaaatgaaaaggagcAAGATAACGGAGAGGCTCTCGGAAAGtgcttttacatttctgaagttTATGATAGTGTGGATTTTGGTTCTCCTGGCCGATTTCATTCTTGAGTTTAGATTTGAGTATCTGTGGCCCTGCTGGCTTTTCTTCGGGAGTGTTTACACCTTTTTCCACTGCCATGGGCTGGTTATATGTGTGGTGTTTGTATGTGCAGCCTTCACCCTTGATGTCTTCTGTTTAATTTTTGTACCTCTGCACTGGCTGTTCTTTGCTGCCAGCACATATGTATTATTCAATTACATATGGCATACCGaGAAAGGGTTGTGCTTGTCGACAGTTTCCCTATGGATACTGCTTGTTTATATTGAAGCATCTCTCAGGTTCAAAGATCTTAAAAATTCTCATCTGCGGATCCAGAAAGCAGTGCAGAATGAAAACGACTTCTTCATGCAACTGCTGCAACAGTCTCTACCTCCAGGGCAGCTCTATCCAAGATGTGTAACAGACTGCAAGGACACTTCTAAGTGGAAAGCAAAATCAGAGTTCCCACAATACCAGTGTCGAAATGGCCCAGTAGCCACAGATGACAAGTACCTGTTGGACTGTCTCCAGCTTGACAAAAAGAATGACAAGGACGTGGAAGACACAAAAGTGACTGATGTCAACATCCAGCTTCCCGATCTAAAATCGAGTGACAATGTGCTCAAGGAGAACTTCCTCAGTAGAACTGGGATGTCCGATTCTTCTGGGAGTTCTGAAAGTCTACCTCAAGAAGAGCAGGGCTGTAAAGCCCCAAAGCTGTTAAAGAGCTCTTCACCCAAAGCGCGGAGGACGCCCAGCAACAGCACTGTGCCTACTGTTAAAGGGGAGAAGAAGCAGAAAAGCACTACCAAAAATATCAGTCCCAACCGAGAGACGGGTGAacagaacatttcaaataatcaCAACATTCACTCAGATCAGATAAGCagATTGGAGCAGGAACTCAAAAGGTTAAAAGGAGAAGTTCAGACGAGCAAACAGACAGAGCAGGAGCTGCGCAGCCACTTCTGTAACCTGACGAACAGCGAGAGAAGCCTTCGGCCAGAAGTCGTACTGCTGCGGCAGGCAAACGATTTGTTACAGAACAAAATTCtttgtataatgaaaaacaagcaaaaggaCAAACAGACATGTACATTGCTAGAAAAAAAGATCAAAGCAGAGGCGGAAGCTCGAGCAGCTATTGAGAAGCAGCTGTCTGAGACACGGACCAGGAAACTTGACGACACTCCTCTCTTGCCTCAAGGTGCTCTACTTTCTACAACTAGGCAGGAACACACAGAGACCCTAAAGAAAAAAGCTAAAGAACTAGAGACAGAGTACAAACATCTCCATCTGGAATTTCAAGGGAAAGAGGGTCAAATCATAGCTCTAGAAAATGAAGTGgagGTGCTTCGTAAATATAAAGGCATTGAGCAGGACGCCGAGATGCTGCTGTCAGCGCTGTCAGCGATGCAGGATAAGACCCAGCATCTAGAATACAACCTAAGTGCCGAAACCAGAATCAAACTGGACCTCTTCTCTGCCCTAGGAGACGCACGGAGGCAGTTAGAAATAGCTCAaggaaaaataatgaaacaggaTCAAGAGATTGGGGAAATGAAACAGAAGATTGCAGAAGTCATGGCTGTCATGCCAGGCATCACATACACTGTTCCACATCCAATTACACCTCAATATTTAACCAAGTTTCTCAACTCAGAGAATTACATGCTTGATCCCAGCGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8623 lncRNA upstream 22328 40977999 ~ 40978319 (+) True G7048
TU8456 lncRNA upstream 659439 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 801685 40148962 ~ 40198962 (+) True G6850
TU8398 lncRNA upstream 886696 40110200 ~ 40113951 (+) True G6847
TU8391 lncRNA upstream 911733 40088608 ~ 40088914 (+) True G6840
TU8658 lncRNA downstream 283540 41295298 ~ 41364066 (+) True G7078
TU8666 lncRNA downstream 355387 41367145 ~ 41368478 (+) True G7084
TU8687 lncRNA downstream 511295 41523053 ~ 41529308 (+) True G7102
TU8686 lncRNA downstream 593352 41605110 ~ 41606759 (+) True G7101
TU8805 lncRNA downstream 954256 41966014 ~ 41966233 (+) True G7182
AMCG00004278 mRNA upstream 59883 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004276 mRNA upstream 79173 40906392 ~ 40921474 (+) True AMCG00004276
AMCG00004277 mRNA upstream 95914 40897450 ~ 40904733 (+) True AMCG00004277
AMCG00004267 mRNA upstream 138882 40851231 ~ 40861765 (+) True AMCG00004267
AMCG00004268 mRNA upstream 175666 40811386 ~ 40824981 (+) True AMCG00004268
AMCG00004286 mRNA downstream 365110 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004289 mRNA downstream 453189 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004291 mRNA downstream 531318 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004292 mRNA downstream 556651 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004293 mRNA downstream 640857 41652615 ~ 41666407 (+) True AMCG00004293
TU7800 other upstream 4000489 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4108901 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4226124 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 4725717 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 5234467 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 447818 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 1200752 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1677021 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4950252 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 7135130 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU453347 True 2982 lncRNA 0.49 7 CI01000228 77394 ~ 88247 (-)