RNA id: AMCG00004286


Basic Information

Item Value
RNA id AMCG00004286
length 3040
RNA type mRNA
GC content 0.46
exon number 20
gene id AMCG00004286
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41376868 ~ 41387623 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGCGTAAGAGCGGTGGGAATCCTCTCCAAGTTTGCAACCCGCAGATACGCACTTTCTACAGGTTACACATGCCGTAACTTCACCGTTTCTTCTTCCATGTTagCTCGAACCCATGTCAACTACGAGGTTAAagaggatgtggctgttatacgAATCAATGACCCAAACTCTAAGgtCAACACTTTGTCAGTCCAAATGCAAACGGAATTAAGCGAAGTAATGAATGAAGTCTGGACAGATGATAAAGTCAAGAGTGCCGTCCTCATCTCCTCCAAGCCTGGCTGCTTCATTGCCGGAGCTGACATCAAcatGATAGCGGCCTGTAGGAGTGAGGCAGAAGTGGCCAACATTTCCCAGGAaggacagaaaatgtttgagaaGATTGAGAAGTCTCCCAAACCCATCATAGCTGCCATTAATGGACCCTGTTTGGGAGGTGGCCTGGAGtttgCCATTGCTTGCCAGTACAGAATAGCAACTAAAAGTAAGAAGACAGTACTCGGTGCACCGGAGGTCATGCTGGGATTGCTTCCAGGAGCTGGAGGAACCCAGCGACTGCCAAAAATGGTTGGACTGCCCTCTGCCTTTGACATGATGCTGACTGGCAGGAACATACGTGCTGACAAAGCCAAAAAGATGAAACTTGTTGATCAACTCGTTGACCCTCTtggtCCTGGATTGAAGAGTGCAGAGGAAAGAACGATTGAGTACCTAGAAGAAGTTGCCATCCAGTTTGCCAAAGGAATAGCCAATAAGAAGATTTCTCTCAAGAAAGAGAAGGGCTTAATGCAGAAAATAACAGACTATGTCATGGGGATCTCATTTGTAAGACAGCAGATCTACAACACCGTAAAAAATAAAGTCATGAAACAGACGAAAGGACTGTATCCCGCTCCTCTGAAAATCATCGagACTGTCCAGGCGGGCATTGAACAGGGATCGGATGCCGGCTATTTAGCTGAATCGCAGAATTTTGGCAAGCTTGCCATGACCAACGAATCCAAAGCCCTGATTGGTTTGTACCAGGGTCAAGTCACGTGTAAGAAGAACCGCTTTGGTACCCCGCAGAAAGAGGTTAAGAGCTTAGCCATTTTGGGAGCAGGTCTGATGGGTGCTGGCATCGCCCAGGTCTCTGTAGACAAGGGTCTGTTCACCATCCTGAAGGACACCACAGTGGAAGGGCTGGGAAGAGGACAGCAGCAAGTCTATAAAGGgcTGGATGGCAAAACTAAGAAGAGAAGCATCACATCCTTCGAGAGGGACAGCATCCTCTCGAACCTCACTGGCCAGCTCGATTACAGCGGGTTTGGTCATGTGGACATGGTCATTGAGGCAGTATTTGAGGACATGAACATCAAGCACAAAGTTCTGAAAGAAGTTGAGGCGgttATTCCTCCCCATTGTATCTTTGCCACTAACACTTCATCTCTGCCCATCAAAGACATTGCTGCAGTTAGCAAAAGGCCAGAGAAAGTCATTGGAATGCATTATTTCTCTCCAGTGGATAAAATGCAGCTGCTGGAAATTATAACTACTGACAAAACCTCCAAGGACACGACTGCCTCCGCTGTTGCTGTTGGTCTTAAACAGGGAAAAGTCATCATTGTAGTTGGGGATGGTCCTGGGTTCTACACCACCAGGTGTCTGGGTCCTATGCTGGCCGAAGCTTTGAGAGTTCTCCAgGAAGGTACTGGCCCCAGTAAGCTGGATTCCCTCACTACTGGCTTTGGCTTTCCTGTCGGCATTGCCACCTTAGCAGATGAGGTTGGAATTGATGTGGCTGCGCATGTGGCCGAAGACCTGGGCAAAGCATTTGGGTCGCGGTTTGGGGGCGGCGATGTTGCACTGCTCAAGGCTATGGTGGAGAAAGGATTCATGGGCCGCAAATCTGGAAAAGGAAACTATGTCTATCAgcaaggaacaaaaaacaaaaatgtaaacccCGGCGCTGAAGAGATTCTAGAGAAGTACAAGATTCCTGCCAATCCTCAAGTGTCTTCAGACTCTGATATCCAGTACCGCCTCATCACAAGGTTTGTGAACGAAGCCATCCTGTGCCTGCAGGAGGGAATTCTCAACAACCCAGTGGAGGGAGACATCGGTGCCGTCTTTGGACTGGGATTCCCTCCTTGTCTTGGAGGTCCATTTAGATTTGTTGACTCCTATGGAGCAGATAAGCTTGTGGAGAAGATGAGGAAGTTTGAAGCTGTCTACGGACACCAGTTCACGCCATGCCAATTGCTTCTTGACCATGCGAAGGATGCCAGCAAGAAATTCCACAAATAGTTTCTGCGTACATTCTGATTTTAACATATCTAGAGAGTTtgctaatttaatttcacaaaaggTTTGTGCTTAAACTATGAAAACCTCTAGGCAGCTTTTAACCAAGTAAATGTATTGGATTGTACTAATTGTTTAAGACATAAATGCATAAACCTGTTTTCCAAGGTGCCTTAGATCTACTGAGTACTCAGGCACTTATGTTTGTAACCagaatgtaacatttttgttttgcactacTCTGTACAAATGTGAgggtttttctttgttgttttacaaACTCAGAGCCCTGGCCATGAAGGGATCTAAAAGCACTTGTACAGTAATGGATGGTATTCCAGTGCAGTTTCATTGTGAGgaatctgaaataaaatcaaaccttCTGCTGATGTATTTtgagatgtgtgtatatataaagaattaTCTAACAAATGGGCAGATCACATCAGGCAAAAAGGGGTAAAAGATCGAGCCCAGCTCATGGAAattctctttccattttcagAAATCACACATGCAGTACACTTTTAATTTGTGAGCTACTTATTGTGAATCCCTGGCCCTAAACTTAGAAACCTGTTCCCAAGTAGCTGTAGACATTTTCCAAGCACTTGTATAAGAAACAAGTGGTCATGGGATTGAATCATGTTGTGTTGAGAGCATTAAACCTTGGCATCAGCAGTCTGGGGAAAACCACTGATGTTTTAGACTGCCAACAGTTTGACGATGGCCATCAAAGGCCTTATCCAGC

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8666 lncRNA upstream 8390 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 12802 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 398549 40977999 ~ 40978319 (+) True G7048
TU8456 lncRNA upstream 1035660 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 1177906 40148962 ~ 40198962 (+) True G6850
TU8687 lncRNA downstream 135430 41523053 ~ 41529308 (+) True G7102
TU8686 lncRNA downstream 217487 41605110 ~ 41606759 (+) True G7101
TU8805 lncRNA downstream 578391 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 677874 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 700168 42087791 ~ 42089653 (+) True G7231
AMCG00004280 mRNA upstream 365110 41000647 ~ 41011758 (+) True AMCG00004280
AMCG00004278 mRNA upstream 436104 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004276 mRNA upstream 455394 40906392 ~ 40921474 (+) True AMCG00004276
AMCG00004277 mRNA upstream 472135 40897450 ~ 40904733 (+) True AMCG00004277
AMCG00004267 mRNA upstream 515103 40851231 ~ 40861765 (+) True AMCG00004267
AMCG00004289 mRNA downstream 77324 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004291 mRNA downstream 155453 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004292 mRNA downstream 180786 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004293 mRNA downstream 264992 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004294 mRNA downstream 317487 41705110 ~ 41730436 (+) True AMCG00004294
TU7800 other upstream 4376710 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4485122 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4602345 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5101938 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 5610688 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 71953 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 824887 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1301156 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4574387 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6759265 48146888 ~ 48147156 (+) True G7999

Expression Profile