RNA id: AMCG00004292


Basic Information

Item Value
RNA id AMCG00004292
length 3846
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00004292
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41568409 ~ 41600974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTGTCTGAAGGTTTCTCGTGCTGTTTGGTTGACAGTGCCCTCCAAGCTCCCGTCCCAGCCCTCTTCGCCACAGTCCCGCTGCCAGTCGCCCTCCGTCCCTGCGAGTAAACTCATCTCGCCGTCACAGAAGCATACCAAAAAGGCTCTGAAACAGgccctgaagcagcagcagcagaaaaacCAGCGCAGACAAGGAGGCTTGCCCACAACATCCAACCCCCGGCTCATCCTCGCAACTGTCAGAGACATGGAGGACCAGACGGCTTCCAAAACCGCATGGGAAGTTAAGCAGTCGGAGAGACGCTCCACCAGCCCCCAGAACTCCACCTCCAGCTCCTCTTCCTCAGGGAAAACTGACCAGTCCCCCTCGGCCGCAGCCAAGAAGGTGTCTCAGAGATCAGACAGGCTGAGTGCAAGGCAGCTGAAACGTACAAAGTGTGCAGAAATCGACGTGGAAACTCCAGAATCCATCTTGGTCAACACCAACCTCCGGGCCCTAATAAACAAGCACACGTTCTCCGTTCTGCCCCCGGAGTGCCAACAGCGACTGCTAGGCCTTCTTCCTGAGGTCGACAGGCAgGCCTGTGCAGATGGAGTGCTGAAACTGAGCAGCTCCGCCCTGAATAACGAGTTCTTCACATCTGCGGCCCAGTCCTGGAAAGAGAGACTGGCTGAGGGTGAATTCACTCCAGAGATGCGTCTCAGGATACGACAGGAGATCGACAAGGAGAAGAAAGTGGAGCCTTGGAAGGATCACTTTTTCGAGAGCTACTACGGCCAACAttctgGACTCACTATAGAGCAATCCAGAAGACTGACAGCAGCTGCTGCCACTCCACAACCAATCAAGCAGCCAGTGGCCTCCCTCCCATCTGTTCAGGTGTCCCCAGTGAAACCCGAGGCAAAGACTGTGCCCAGGGAGGAAGCCCAGGTCAAGGAAAgtaaaaaggaagaaacaagAACCTCTGTAACTCCTGAAAGCTTAAAAACAGAGCCCGCTCTTAAAGAACCCACAGCCTCAACGAGAGTCGTTCTGGAGAAGCCCCCCAAAAATTCTGAGACTGAAACATCTTCAGCAGAGCCTCAGCAAATGGTGATATCTGCACAACTAGAAAAGGGGGAAGCATTGAACACCAAAACGATGAAAATGTCTGAacagacagaggaggaggagtccATGGCACACCTGTCCCCCCAGAGGTCTCCAGAGCCCAGCCGGGACAAGAAGGAAGTTGGCACCACAGCAATAAGACTCCCTGTGAGTGACAGTCCTAAGAAGGTGCCAGGAGCAGAGCGGATGGAGGTAGACCAGGAGGGACTGAAGAGGAAGTCACCCAACGATCAGGACGAAGTGTTGCGGGGTCCAGAGAAGAGGCCTCGGGTTTCAGAGCAACCAACGTTTCTTACGCCATCCAAAAGCTCCCCCGAGGGCAAGGAATGCACCCCAGAGCCGAGAGTGCCACCGCTCAAGATTCCCGTGTCGCGGATATTACCAGCGGCCGCCGCTGCGGGTCAGGTCTCTCCCAGGGCCCCCTTTGCACCCCCCTTCCCCAGTCCAGGGCGAACTGGGGCGCGTACTTTGGCCGACATCAAGGCCAAAGCCCAATTTGCCAGAGCCCAGCGAGCTGCAGCCGCTGCAGCCGCAGCCGCGGCGGCCGCTGTGTCCTCTGCGGGGGGTGCTGTGCCGGGCCCCGGGccagggggagggggtgggaagCCTGGGGGAGACGGCCACGGTGCAGCAGTGGCTAGCGAGTCCATCACTGCCTCACCAGAGCTGGGGAGtgctggaggaaggggagctgCGGGAGGGATTCCACCTGCCAGTCCAGAGGCCCAGATCAAGAGCTCCTCCTgcccagtcagtgactctggaGCACAATTACAGCAAGCCACCACCTCTGAGGTCAGAGCCAGCGGCGAGGCTTCAGCCCCCAGTTCATCGTCTGCGAGTTCTGCACAGGCCGCCTCACCTTCCGTGACATTTTCCAACACAGGAAACCGTTGTAAAGCATTAGTGTCAAATCCCTCAGCTCCACTCTCTGTTACGTCCTCATCCCAGACCTCATGTTCCAACAAAGCTCTCGGGAAACAACAATCAAAACCTGCCTCTTCTGCCCAGGCGATGAAACAAACAGGTCCAGACACAGAGGGGAGAAAAACAGAGGGTGACAAACATGGAAAAGCAGCAGTTGAGGAGCTGAAAGCTTGTTCCGCTGCGGGAAAGACAGAGTCTGAACTTGTCCGGACACCATCGAACCCTCCCACGCCTGTAGGCACGCAGCCTGTCACACTTTCAGCCTCTGCCACACTACCCACACCTCCACATTCGATCATCTCAGTCACGCCTCCAGCTTTGAGCAGTGTTTCGCCTACGTTAAGTCAAAAGCCACCAGAGAGCTCTCTGACAGCCGGGCCAGCAGCAAAGGCCAGTTCGTCTATTCCGGCCAACAACCCCCTGGTCACCCAGCTGCTTCAAGGGAAAGAAGTCCCACTTGAGCAGATCCTCCCGAAACCTCTCACAAAGATAGAGGTCAAGCCCATCATCGTGGCCccgggagagaaagggagaacaTGTCATGCCACTGCGGCCCTGGATTCTGGGGCAAGCAGAGAAAGTCAATTCCGCACATGCCCAGATGTTGCTGAAAAAACAAGTAATCTGCATCGGCCGTTAGTGCCTAGTCAGCTATTCCCAGCAAGGACAGTGAGCGTGGAACTTGCCCAACATCAGCGGGAAATGCTGAACAAGGCCACCCAAGAGCAGATATTACAGACCCTTATGCAGCGAGCGCAGAGTCAGCAGTTTGTCTCTGGGTCTCAGCCTTTGCAGCGTGAGATGTGTCAGTTTGGCTACCAGATGGAGTACTCCAGTGGTCAGAGGTGTGCCCTGGGATTCATGGGCCGGAAAAGACTGTCCAAGCCTGCCATGTCAGGGCACTACCTGCTCAACATCTCAACGTACGGGAGAGGATCCGAGAGCTGCAAACGTGCGCACTTGGCCATGCAGGCGCCCCTGGCCAACCTGAAGAAGGAATTCGTGGAGGGTGAAAGTGGCccagaggaaggagaggagcCACTCAAAAGCTCTCACGACTCCTCAGCGAGTCAGTCTGACTGTACAGGAGTCAAGAAAGAGCATCAGGGACCCCTGGATGGctcccacactgcactgagccCAGGTCACACACAGCCCAGCCAGTCGCCTGACTTGAATCGCAGCCGCAAGATAAAGTCAGAGTCCCCTTCCTCCGGACAGTTGCCAGACAGGGAGGACGGCTCGCCTCCCGTAGACGGGAACGATGTTGCAGCGACACCCAAAGAAACTGACCAGGGGGCACTGCCACGTGCCGCGCACCCTGAGGTTGGCAATAACCCAGCAGGTAACTCAGAGCCATATCGAACGCCAGCCCAGGCAGACATGGGCCTTCATCGCCGGCAAGCTCCTCTTCATCACCAGCAAAAAATGTACGAGAATCCCATGGTTGGGCGGCTCTACGGTGGCATGATCAACATGTCGTCGTCTCATACACTCAACCACAGCTCAGCAGGGTCGGGCAACTCCCCGGGCTACAGCCCAGTGTCGAGCACTAGTGGCAGTGTCATGTCCTTTTCGGTGACTGTGACCACCATACCTGCTAACCATCCATTAGACCATGCCAACCATGGCGACAGCGCTCCTGGGCAGCCGTTCACTGAGGGCTCAGCCATGGACGACTCCCCATCCAAATGCTACTGCCGGCTAAAAGCCATGATCATGTGCAAGGGTTGTGGGGCATTTTGTCATGACGACTGTATCGGCCCTTCCAAACTTTGCGTCTCATGCCTAGTGGTGCGatga

Function

GO: NA

KEGG:

id description
K11471 ASXL; additional sex combs-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8687 lncRNA upstream 39101 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 199931 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 204343 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 590090 40977999 ~ 40978319 (+) True G7048
TU8456 lncRNA upstream 1227201 40339067 ~ 40341208 (+) False AMCG00004257
TU8686 lncRNA downstream 4136 41605110 ~ 41606759 (+) True G7101
TU8805 lncRNA downstream 365040 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 464523 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 486817 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 732451 42333425 ~ 42336643 (+) True G7272
AMCG00004291 mRNA upstream 17440 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004289 mRNA upstream 51019 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004286 mRNA upstream 180786 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004280 mRNA upstream 556651 41000647 ~ 41011758 (+) True AMCG00004280
AMCG00004278 mRNA upstream 627645 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004293 mRNA downstream 51641 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004294 mRNA downstream 104136 41705110 ~ 41730436 (+) True AMCG00004294
AMCG00004295 mRNA downstream 228765 41829739 ~ 41852260 (+) True AMCG00004295
AMCG00004297 mRNA downstream 295277 41896251 ~ 41916088 (+) True AMCG00004297
AMCG00004296 mRNA downstream 348397 41949371 ~ 41964474 (+) True AMCG00004296
TU8679 other upstream 61178 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4568251 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4676663 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4793886 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5293479 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 611536 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1087805 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4361036 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6545914 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 7331476 48932450 ~ 48934095 (+) True G8099

Expression Profile