RNA id: AMCG00004294



Basic Information


Item Value
RNA id AMCG00004294
length 912
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00004294
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41705110 ~ 41730436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCACTAGGTTGCAGAACAGCCTGGATATGCCTAATCGAATGGCTGATGAACATGCTTTGATAGCAGCATATGTGAATCAGCTACAGAATGGCACACGCAGTGTACTTGACAGCCCCAGTCGACTGGACGAGGAGCACCGTCTCATCGCCAGGTATGCGGCCCGCCTGGCAGCAGAAGCTGGCAATGCCACTCAACGCCCTCCAACTGACTTGGGGTTCAATTTTGATGCCAACAAGCAACAAAGGCAGCTGATTGcagaactggaaaataaaaatagGGAGATCTTGCAGGAGATTCAGCGGCTGAGACTGGAGCATGAGCAGGCGTCCCAGCCCACCCCAGAGAAAGCCCAGCAGAACCCCACGCTCCTCGCCGAGCTGCGGCTGCTCAGGCAGAGGAAGGACGAGCTGGAGCAGCGCATGTCGGCATTGCAGGAGAGCCGGAGAGAGCTGATGGTGCAGCTGGAGGGACTGATGAAGCTGCTGAAGGCCCAGGCAGCCAGCTCCCCCCATTCCTCACCCAGTCACGGTGCCAGTCGTCCGATGCCCATGCCCGTCAGGTCAACATCTGCCGGATCCACCCCCACCCATGTACCTCAGGACTCCCTGGCAGGGGTTGGGGGTGATGTGCAAGAAGCTTTTGCCCAAGGTGCTCGCAGAAATCTTCGCAATGATCTGCTAGTGGCAGCTGATTCAATTACAAACACTATGTCATCACTGGTCAAAGAGCTTCATTCAGTAGATGAAGGTggtgaagaagaagaggagaagaTGCAGAATGGAAAAGACAGGGGCACAGTGACTGTAAAAAGCAACCAATCACTCTGCAGACACACCCTCATCCTTGTGGACAGGCACACCATTCCATCAACGATGACAggtTTCCTTGTCATTTTAATTGGATCACGAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8686 lncRNA upstream 98351 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 175802 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 336632 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 341044 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 726791 40977999 ~ 40978319 (+) True G7048
TU8805 lncRNA downstream 235578 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 335061 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 357355 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 602989 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 634432 42364868 ~ 42365654 (+) True G7278
AMCG00004293 mRNA upstream 38703 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004292 mRNA upstream 104136 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004291 mRNA upstream 154141 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004289 mRNA upstream 187720 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004286 mRNA upstream 317487 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004295 mRNA downstream 99303 41829739 ~ 41852260 (+) True AMCG00004295
AMCG00004297 mRNA downstream 165815 41896251 ~ 41916088 (+) True AMCG00004297
AMCG00004296 mRNA downstream 218935 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004299 mRNA downstream 280249 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004298 mRNA downstream 298941 42029377 ~ 42045091 (+) True AMCG00004298
TU8679 other upstream 197879 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4704952 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4813364 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4930587 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5430180 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 482074 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 958343 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4231574 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6416452 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 7202014 48932450 ~ 48934095 (+) True G8099

Expression Profile