RNA id: AMCG00004295



Basic Information


Item Value
RNA id AMCG00004295
length 591
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00004295
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41829739 ~ 41852260 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCAGAGGAAGGAGTGGTGGGGTCGAAGTGTCTGACTAGTGTGGTGGGCCAGTCCTCGGAGCAGGTGCACAATGGAGACGTGGACAGTCATCCTGGGGACTCTATTGCTGCCTCCTCCAAGCAGGACAGGAACGTCCCAGAGAATGGGGTCCCCAGAGAGCCTGTCCGCAAGTCTGAAGAGCTTCCGGATCAGGAGGCCCCAGGGGAAGGATACAGAAAGGGGAGGCAAGGCTCCTCCCTGGAGAATGGCTTCCCGACTTCCCTGGATGACCAGGATTCGGAGAAGGACGGAGAGCACGTGCCTCCCACTCCTCGCAAGAAGCGGGGGAGACGGAAACTGGAGCATCCTGAAAAACatattgaggagaaggaggagagcaGCTGTGAGTCCGTCAAAACCGAGGGAACTCGAGCCAGGCTTCGTGGGGGACTGGGCTGGGAAACCAGCCTACGTCAGAGGCCCATGCAGAGAATTACCTTCCAGGCTGGGGACCCTTATTACATTAGCAAGAGGAAGAGGGATGAGTGGCTGGCCAAATGGAAGATGGAGGTGAGTAAATCGCTCAACACAGTGTTTGAGAGACAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8686 lncRNA upstream 222980 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 300431 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 461261 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 465673 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 851420 40977999 ~ 40978319 (+) True G7048
TU8805 lncRNA downstream 113754 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 213237 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 235531 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 481165 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 512608 42364868 ~ 42365654 (+) True G7278
AMCG00004294 mRNA upstream 99303 41705110 ~ 41730436 (+) True AMCG00004294
AMCG00004293 mRNA upstream 163332 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004292 mRNA upstream 228765 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004291 mRNA upstream 278770 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004289 mRNA upstream 312349 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004297 mRNA downstream 43991 41896251 ~ 41916088 (+) True AMCG00004297
AMCG00004296 mRNA downstream 97111 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004299 mRNA downstream 158425 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004298 mRNA downstream 177117 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004301 mRNA downstream 195383 42047643 ~ 42065411 (+) True AMCG00004301
TU8679 other upstream 322508 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4829581 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4937993 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5055216 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5554809 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 360250 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 836519 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4109750 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6294628 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 7080190 48932450 ~ 48934095 (+) True G8099

Expression Profile