RNA id: AMCG00004303


Basic Information

Item Value
RNA id AMCG00004303
length 2552
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00004303
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42089871 ~ 42098322 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACGGGCGCGCGCGGGCGGCTCAGCGGTGTCCTAGCAACGCAGATGACAACAGCGCTGCCCGGGCTGCGCGCGCACTCCCGCACGGCTCACTTTCATCCCAAAACCCTCGCCGACCCGGGCTGCGCGCTGTCCGCTTCTCCCACATGAGTCAACTCGCAAACGCCCCAGAGCAACATGAAAGCGGCCCGTCTGTGGAGTCCGACGTCCTGGAGGAGAGGCTCGCCGCCCGCCGCCTGCGCATGGCCGCCCGGGCCGAGGCCAAGAAACGGGAGGCAGTGGGGGACCATGCCCGGGAGAAGCACGATGCAAGGGAGGAGCCGAGGAAGAGCCAGCAGCAGGTGGAGCAGAGCCGCAAGAGGATGACTAAGCTGCAGGCTGATGGCACGGAGCTGGTGACTAACATCCAGGTGGCAGCAGACTGGAGGGAGTCTCGGAGAAGgaccgaggaggaggaggccaaGAGACAGAGGACAGAGAAGCTGGAGAATGAAGCCAAGGCGAGCTTAGAGAAGTTTGAGGAAATTGCCAAGAAATGGACATCCAGCAGAATGAAGGAGATCCCACAGGAGCTGAGGGATGCCCTCAACACCCAGCAGCATCAATGCGCCCTCCTCATTGAGGAAAAGAACAAGGTCATTCATGACCTGCAGCAGGAGCTGAAAGTGAGTGACAACCGCTACGTGAAAGACCTGAAGAAACAAGCAGAAGACATCGACCTCATGATTGAGAGAATGGAGGAACAGATCAAGAATTTGATGAAATCCTACCGAGAAGAGCAGGACCAGATTGAGGTTGAACTTGAATTTTGCTATCCCTTCCTTCTGTCCGTTGTTTTCTTTCACGAATGTGTTGAAGGCTGCCATTGGCCCTCCATGTCTTTCTCATTTTTGGTCATGTTTGCACAGAAAGCCTTTGAAATGGAGCGAAGGGAGCTTCTGGacaacagctttaaaaaatggGAGCAGATGATGCACAATCGTCGAGACAAGGAGCTGGAATATCTGACCCTTAGGATGAAGTCTGTGGAGGAGCAAGaaaagcagctgcagcagctgaGGGTGGAGGATGCGGAGGAGTACAACATGATCAAGATCAAGCTGGAGACAGACGTGCAGTTGctggagcagcagctgcagcagatgaaagccACCTTCCAGCTCAACCAGGAGAAACTGGAGTATAACTTCCAGGTGCTGAAGAAGCGCGACGAGGAAAACACAATCACCAAGTCCCAGCAGAAGAGGAGAATCACCAGGCTGCAGGATGTTCTGAACAACCTGAGGATCAAACTTGCCAAGCAGGAGAAGCAGTCGTGGGAGGACAACCGGTCCCTGACGGATGACTATGAGAGGATCATGCAGCAGTACACGGACACGCAGAGGAAGATGAGGCAATTTGCTGCCGTTGATGCAAAGACGTTCGAGGAGATGTGGCTGATGAATGAGGCGGAGGTGAAGGAGCTGGTGGAGAAGGCGCTGGAGACTGACAGGCTCATTCATGAGCAACAGCTGGGCCTGGCCTGGATGCGGCCCCCGCTGCCCTTCACGGCGCGCTCTGGACCTGTCCTGCCGCAGCGCAGCACCAAGAGGCCGGCTGCACAGCTGGCGGGGGAGCTGCTGCTGAGAGGGAGCGAGGCTGGTGAGGAAAAAGTCAGAGGTTCTGGCCCGGCAGCACTAGTCTCCCCAGGCAGCGAGCCCCCTGCCCCGGACCAGGAAGCATTAGACAGCGGACCCCTGCAGGGTCCTTCTGAGGAGCATGTGCCGATCTCTCCCCAGACGGTGAAGAGACTGCTGCAGATCCTGTGTGACGAGGCGGGCTTCTTGATTGAGAGTAAATTACTCACATTACTTTCCCCCTTGGAGAAGGATCAGCAGTCCCTCATGAAGCTGGATGCCATATTCTTGGCCCTGGGGATTGAGAATGAAGACGATGTTTACGCGCTCACAGATTTCTTCATCAAGTACAGAGAGCAGCAGGGAGGAAACACTGAGttttcagCAGAGGACTCGTCCCTGTCACAGAGCGAGGGCAGAGCGGAGAGGCGCAGAGAGGTGTCGGGTATGGCACCTGGAGGAACAGTGTCCGATCTCATTCACCCCAATGACGTCCTGAAGGCACTGCGGGCAGAGAAGCGGCTGTCCAAGGTTCTGAACCTGGAGGACAGAGATGACTCTGAAGACGCTGCCTTCTGGGATGCCATGGCCAGAGTGATTCCAGAGTCCAAGCTCAAGACCTGGGATGCCCTGGAGACGGCCTTGGAGAAGTACTACCACGTCCTGACGGAGCGGGCAGCGCTCATCGATGACACGCAGGGCCTGAAGCAGCAGAACGCAGAGCTCCGCATGCTGCTGCATCAGTATGTCAATTCCAGGGTGAACGCGGAGCTGGAGATCCCCCCCACACAAGTGATGCAGATGCAGCCCCAGGGGAGCTGATGGCCGGAGTGCACAGCCAGGAAactttatattgatttttaattagaaatcaTGTGAGTTCCACTGTTTTGAAAACCTATTCTGTTCCAGTATTTCTTATTAAACGCTCTCAC

Function

GO:

id name namespace
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19754 DRC1; dynein regulatry complex protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8872 lncRNA upstream 218 42087791 ~ 42089653 (+) True G7231
TU8861 lncRNA upstream 22146 42065497 ~ 42067725 (+) True G7221
TU8805 lncRNA upstream 123638 41966014 ~ 41966233 (+) True G7182
TU8686 lncRNA upstream 483112 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 560563 41523053 ~ 41529308 (+) True G7102
TU8918 lncRNA downstream 235103 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 266546 42364868 ~ 42365654 (+) True G7278
TU8939 lncRNA downstream 278303 42376625 ~ 42379961 (+) True G7288
TU8944 lncRNA downstream 377254 42475576 ~ 42475886 (+) True G7293
TU9117 lncRNA downstream 1137496 43235818 ~ 43237653 (+) True G7418
AMCG00004300 mRNA upstream 6029 42069528 ~ 42083842 (+) True AMCG00004300
AMCG00004301 mRNA upstream 24460 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004298 mRNA upstream 44780 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004299 mRNA upstream 65131 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004296 mRNA upstream 125397 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004304 mRNA downstream 112108 42210430 ~ 42214749 (+) True AMCG00004304
AMCG00004305 mRNA downstream 121698 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004309 mRNA downstream 240192 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004308 mRNA downstream 251909 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004314 mRNA downstream 450018 42548340 ~ 42576558 (+) True AMCG00004314
TU8679 other upstream 582640 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5089713 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5198125 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5315348 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5814941 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 114188 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 590457 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3863688 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6048566 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6834128 48932450 ~ 48934095 (+) True G8099

Expression Profile