RNA id: AMCG00004306


Basic Information

Item Value
RNA id AMCG00004306
length 780
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00004306
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42101689 ~ 42108599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCTGAAGGGACAGCAAGAGGACAAGCAGGACACTGATGTCCACTACCATTCACTGACGGGAGAAGGCAACTTCAACTGGCGCTTTATCTACCCCTTTGACTACCTGCTGGCGGAGGAAAAGATCGTTATCTCCAAGAAGGAGTCCATGTTCTCCTGGGATGAGACCGAGTACAAGATCCCCGCACGCCTCACGCTGCAAGTGTGGGATGCTGACCATTTCTCCGCTGATGACTTCCTTGGAGCAATTGAGCTGGACCTAAACCGCTTCCCCCGCGGGGCAAAAACAGCTAAGCAGTGCTCCATAGACATGGTGCTGAGCGAGCAGGAGCTGCCCACCATCTCCATCTTCAAGCAGAAGAGGGTCAAAGGATGGTGGCCTTTCGTGGCCCGGGACGAGAACGACGAAATGGAGCTCACGggTAAAGTGGAGGCAGAGTTGCAGCTCCTGAGTGCAGAGGAAGCGGAGAAGTGTCCGGCCGGCCTTGGGCGCAATGAGCCTGACCCACTGGAGAAACCCAATCGACCGGACACCAGCTTTATCTGGTTCATGAACCCCCTGAAGTCTATCCGGTACTTCATCTGGCACAACTACCGCTGGCTGATCCTGAAAATCCTAGCCCTGGTCCTCGTCCTCCTCTTGGTGGGCCTCTTCCTTTACTCCATGCCCGGCTACCTGTGGCTCATCATTAAGATCGTCCTGGCACTGCTCATGCTGGCCATGCTCGGCCTCTTCCTCTACAGCATGCCTGGCTACATGGTGAAGAAGCTGCTGGGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8884 lncRNA downstream 12062 42087804 ~ 42089627 (-) True G7243
TU8863 lncRNA downstream 34025 42066598 ~ 42067664 (-) True AMCG00004302
TU8816 lncRNA downstream 76949 41985243 ~ 42024740 (-) True G7192
TU8752 lncRNA downstream 458963 41623932 ~ 41642726 (-) True G7148
TU8732 lncRNA downstream 499088 41601425 ~ 41602601 (-) True G7138
TU8905 lncRNA upstream 111359 42219958 ~ 42220184 (-) True G7259
TU8914 lncRNA upstream 156091 42264690 ~ 42264977 (-) True G7268
TU8916 lncRNA upstream 204320 42312919 ~ 42313118 (-) True G7270
TU9007 lncRNA upstream 584155 42692754 ~ 42719691 (-) True G7335
TU9010 lncRNA upstream 617313 42725912 ~ 42737850 (-) True G7336
AMCG00004302 mRNA downstream 34519 42064989 ~ 42067170 (-) False AMCG00004302
AMCG00004290 mRNA downstream 628649 41469364 ~ 41473040 (-) True AMCG00004290
AMCG00004288 mRNA downstream 659505 41438900 ~ 41442184 (-) True AMCG00004288
AMCG00004287 mRNA downstream 675297 41387789 ~ 41426392 (-) True AMCG00004287
AMCG00004285 mRNA downstream 726740 41366801 ~ 41374949 (-) True AMCG00004285
AMCG00004307 mRNA upstream 10054 42118653 ~ 42150175 (-) True AMCG00004307
AMCG00004310 mRNA upstream 224625 42333224 ~ 42336612 (-) True AMCG00004310
AMCG00004311 mRNA upstream 246952 42355551 ~ 42361988 (-) True AMCG00004311
AMCG00004312 mRNA upstream 256168 42364767 ~ 42366935 (-) True AMCG00004312
AMCG00004313 mRNA upstream 269199 42377798 ~ 42531006 (-) False AMCG00004313
TU8320 other downstream 2252566 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 4732867 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 6687243 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 7137850 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 7209076 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 268127 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 2412315 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 4198327 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 4359526 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 4776036 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_07870639_07909517.mRNA True 6127 mRNA 0.47 43 CI01000325 7870639 ~ 7909826 (+)