RNA id: AMCG00004310


Basic Information

Item Value
RNA id AMCG00004310
length 1132
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00004310
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42333224 ~ 42336612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGAGCCATACTGTGTAGGACGCTGCTGGTGTTAGTGAGGGCTACTGAAATACCGACACTATTGATTAAGTGTTAATAAGCGAGCATGTTGTGTAGAGCCAGTAACATACGCAGATGCGCAGCCTCCCTGAGTCCAGCTGTGAGCTGCATGGCCTCCAGGCAGAAGCACAGCCTGCCCGACCTGCCCTATGACTATGGGGCGCTGGAGCCACACATCAGCGCAGAGATCATGCAGCTGCATCACAGCAAGCACCACGCCACCTATGTCAACAACCTCAATGTGGCCGAGGAGAAATACCAGGAGGCGCTGGCAAAAGGGGAGCTGCTGGAAGCCATCAAATGTGACTTTGGCTCCTTTGAGAAAATGAAGGAGAAAATGTCGGCGGCGACGGTGGCGGTGCAGGGCTCCGGCTGGGGCTGGCTGGGGTTTGAGAAGGAGAGCGGACGGTTACGAATTGCAGCCTGCGCCAACCAGGATCCTCTCCAGGCCACCACAGGTCTTGTTCCTCTGCTGGGAATTGATGTGTGGGAGCACGCCTATTACCTGCAGTACAAAAATGTTAGGCCTGATTATGTCAAGGCTATCTGGAATGTGGTGAACTGGGAGAATGTGGCAGAGAGGCTGAAAGCTGCAAAGAAGTAGTTGGACTTACTGTCAGACCCTATGAGCTCTAAAAGAGGATGCTTTCATCTGTGAAGCACCCCTTACCACATGCTTTACCAAGAGGcagattcaattaaataaaaacaacacttaGTGGGCTCTGTTAAAGAAGGCAAGGCTGGTGAAATGAATGCTCTTCTAGATCCTGTGTTCAGAGCGGAGTGTTTTCTACCTGAATGTATCGAGGCAGCTTGAAACATGGAAAgagatgctttgttttttgtttttttttggtaatgtgATATCTGAttaaaagtcatttaaaaaaagtgaccCAATTTAATGTGCtggttttaatatgttttttgttgtgggATTGGATGAGAGGCTGATTGTGTTCAAAGACGAGGGGATCTCAAAATCAGCTCGTCGCTCACCCCCCTGTTACTGAATcggtttaattaattcagtaagTGTACATAGACTGCAAAactttttcaattaaactacaattgactgatttcct

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051597 response to methylmercury biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K04564 SOD2; superoxide dismutase, Fe-Mn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8916 lncRNA downstream 20106 42312919 ~ 42313118 (-) True G7270
TU8914 lncRNA downstream 68247 42264690 ~ 42264977 (-) True G7268
TU8905 lncRNA downstream 113040 42219958 ~ 42220184 (-) True G7259
TU8884 lncRNA downstream 243597 42087804 ~ 42089627 (-) True G7243
TU8863 lncRNA downstream 265560 42066598 ~ 42067664 (-) True AMCG00004302
TU9007 lncRNA upstream 356142 42692754 ~ 42719691 (-) True G7335
TU9010 lncRNA upstream 389300 42725912 ~ 42737850 (-) True G7336
TU9118 lncRNA upstream 899206 43235818 ~ 43237610 (-) True G7419
TU9175 lncRNA upstream 1066341 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA upstream 1083239 43419851 ~ 43428586 (-) False AMCG00004336
AMCG00004307 mRNA downstream 183049 42118653 ~ 42150175 (-) True AMCG00004307
AMCG00004306 mRNA downstream 224625 42101689 ~ 42108599 (-) True AMCG00004306
AMCG00004302 mRNA downstream 266054 42064989 ~ 42067170 (-) False AMCG00004302
AMCG00004290 mRNA downstream 860184 41469364 ~ 41473040 (-) True AMCG00004290
AMCG00004288 mRNA downstream 891040 41438900 ~ 41442184 (-) True AMCG00004288
AMCG00004311 mRNA upstream 18939 42355551 ~ 42361988 (-) True AMCG00004311
AMCG00004312 mRNA upstream 28155 42364767 ~ 42366935 (-) True AMCG00004312
AMCG00004313 mRNA upstream 41186 42377798 ~ 42531006 (-) False AMCG00004313
AMCG00004316 mRNA upstream 303797 42640409 ~ 42660607 (-) True AMCG00004316
AMCG00004317 mRNA upstream 342712 42679324 ~ 42687565 (-) True AMCG00004317
TU8320 other downstream 2484101 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 4964402 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 6918778 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 7369385 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 7440611 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 40114 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 2184302 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 3970314 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 4131513 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 4548023 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile