RNA id: AMCG00004332


Basic Information

Item Value
RNA id AMCG00004332
length 1485
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00004332
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43380670 ~ 43411096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatgatgatgatgatgatgattgccACGGAGCGGAGATGGGCCCCTGGGTGCGAGTCAGCGTGGCAGACCACAGCCTCCGCTGCGAGCGGCAGCAGTAACCGCGGGAGACGCCTCAGCGCCACCTCCGACAGCGGGGACACAGGGATAGGCACGTCTTGCTCAGACAGCATTGAAGATCACTCCAGCTCCAGTGGCACGCTGTCCTTCAAGCCCATCAGGTCGCAGGTGACCATCCCCACTGCCCATGTGATGCCCTCCACCGCCGGCTCCAAGCGCAGCCCCCACTCACCTGTCGCTGACTGGAAGTCTGCCAATGGACCCCTGGACACACTCGGCGGTCAGGGAAGGTGTGGCCCAGGCGAGAAGGCTTGTGTGACAGGGGAAAACGTGGGTGACAGAAACATGGTGCAGAAATCCCAGCTGTACTACCTGCAGGAGCCCCAGAACCAGCAGAGGGCACTGGCAGGCTGTGAGCGCCGCTATCCGTACGATCTGTGCAGCAAAGCACAAAGCCCAACTGCCTCGCCCCTCAAACCCAGTACCTTAGTCTTGACCTACAGTGCCTTACCTGAGACCAAGCCAGTGGGGCCAGGCCACCCAGCCTCTGAACAGAGATGCCTGCCGCTAGGGCACCAGACTGTGGGGGGATCACCCATCCAGCCTGCTGTGAGGACACAGATGTGGCTCAGTGAGCAGATGCACTCGAACCCTGTGGAGTACAGCAGGCCAGCTCCAGACGGCCTGTGTGACCTGTCAGCCTGGCCACGGGGACAGCAGCTAGAGTGTCTCCGTCAGAATGCTGAGCTGACGCAGATTCTCACAGGATCTCCTCTCCCAGGGGACACCTTACTGAAAGTCAAAGAGGGTCTCCTGCGACAGAAAGAGATGCTGGCCATTGTTCAGGAAAGGGCCAGAGGGCTGCAGGAGCGAGTCGGTGAGCTGGAGAAGAGCCTGGGCCAGAGCCGAGTCCTAGTCCAGGAGAAGGAGACCCTGATTGAGTCCcagaggaagaaggagaaggagctgGTTGGCTCTGTACAGAGCTTGCAGCAGAAAGTGGAGCAGTGCCTTGAGGATGGCGTCAGGCTGTCCATGCTGGACATGAAACGGCTGGAATGCGACAACACGCGTCTCCAGGAGCAGCACAGCCAGAGCACCAAGGCAACAGAGAAGAAGCTGTTGATGGAAAAAACAATTTCACAGGACCTAAGGAAGCAGCTGCTAGAAAAAGAGGCCGACCTGCAgaaactctctctcacacctgAGGAGAAGCAGAGTCAGGCAGGGGAGGCGAGTGGTCTGGGAGGAGAAGAGCCACCCCGTGCCGTGGGCCAGCTGCTGAGGGAGATGGCACTGTGTCTGATGGACCTCAGGGCCCTGTGTAGCATCCTGACCCAGAGAGCCCAGGGCAAGGAGCCCAACCTCGGCCTGCTGCTGGGAATCAAGTGTAAGTTCTGTTCTCTCGCACCGTTGCGCCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9148 lncRNA upstream 33711 43346350 ~ 43346959 (+) True G7441
TU9117 lncRNA upstream 143017 43235818 ~ 43237653 (+) True G7418
TU8944 lncRNA upstream 904784 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 1000709 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 1015016 42364868 ~ 42365654 (+) True G7278
TU9208 lncRNA downstream 180654 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 667249 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 672002 44083098 ~ 44088037 (+) True G7569
TU9326 lncRNA downstream 925355 44336451 ~ 44336681 (+) True G7584
TU9368 lncRNA downstream 1119244 44530340 ~ 44543143 (+) True G7614
AMCG00004329 mRNA upstream 17983 43350779 ~ 43362687 (+) True AMCG00004329
AMCG00004330 mRNA upstream 41810 43329372 ~ 43338860 (+) True AMCG00004330
AMCG00004331 mRNA upstream 63262 43295652 ~ 43317408 (+) True AMCG00004331
AMCG00004327 mRNA upstream 146377 43216106 ~ 43234293 (+) True AMCG00004327
AMCG00004328 mRNA upstream 203611 43157068 ~ 43177059 (+) True AMCG00004328
AMCG00004335 mRNA downstream 115884 43526980 ~ 43534658 (+) True AMCG00004335
AMCG00004342 mRNA downstream 199685 43610781 ~ 43611095 (+) True AMCG00004342
AMCG00004338 mRNA downstream 214519 43625615 ~ 43631896 (+) True AMCG00004338
AMCG00004343 mRNA downstream 259924 43671020 ~ 43721979 (+) True AMCG00004343
AMCG00004346 mRNA downstream 384125 43795221 ~ 43798475 (+) True AMCG00004346
TU9000 other upstream 689561 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1164308 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 1873439 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 6380512 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6488924 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2550914 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4735792 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5521354 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6740168 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7332695 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile