RNA id: AMCG00004334


Basic Information

Item Value
RNA id AMCG00004334
length 456
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00004334
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43519979 ~ 43539410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGGAGAAGAAAATTTACTGGCAATATTGAAGAGAAGATGGTGGAAGTACATGATCCTGGGGTTAATAGATATAGAAGCCAATTACCTGGTAATCAAAGCATACCAGTACACCACACTTACAAGTGTGCAGCTTTTAGACTGTTTTGTTATCCCAGTGGTGCTATTGCTGTCCTGGTTCTTCTTGTTGGTGAGGTACAAGGCCGTTCACTTCATTGGCGTCGGAGTGTGCCTGCTGGGAATGGGCTGCATGGTGGGTGCTGATGTACTGGTTGGGAGACAGCAGGGCTTCGGAGATCACAAGCTCCTGGGAGACCTGTTGGTCCTGGCTGGAGCCACGCTGTACGGCATCTCCAACGTGTGCGAGGAGTTCATCGTGAAGAACCTCAGCCGGGTGGAGTTTCTGGGAATGATCGGCCTCTTTGGCTCTTTCTTCAGTGGTATACAACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9175 lncRNA downstream 91393 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA downstream 91393 43419851 ~ 43428586 (-) False AMCG00004336
TU9118 lncRNA downstream 282369 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 782129 42725912 ~ 42737850 (-) True G7336
TU9007 lncRNA downstream 800288 42692754 ~ 42719691 (-) True G7335
TU9289 lncRNA upstream 329053 43868463 ~ 43868706 (-) True G7554
TU9322 lncRNA upstream 543687 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 638236 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 796861 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 868950 44408360 ~ 44408665 (-) True G7587
AMCG00004337 mRNA downstream 5543 43485269 ~ 43514436 (-) True AMCG00004337
AMCG00004333 mRNA downstream 34730 43467169 ~ 43485249 (-) True AMCG00004333
AMCG00004336 mRNA downstream 69724 43424197 ~ 43450255 (-) False AMCG00004336
AMCG00004325 mRNA downstream 484701 42975752 ~ 43035278 (-) True AMCG00004325
AMCG00004322 mRNA downstream 594180 42922676 ~ 42925799 (-) True AMCG00004322
AMCG00004339 mRNA upstream 53743 43593153 ~ 43604125 (-) True AMCG00004339
AMCG00004341 mRNA upstream 66459 43605869 ~ 43608735 (-) True AMCG00004341
AMCG00004340 mRNA upstream 95737 43635147 ~ 43671248 (-) True AMCG00004340
AMCG00004344 mRNA upstream 186262 43725672 ~ 43734731 (-) True AMCG00004344
AMCG00004345 mRNA upstream 238739 43778149 ~ 43789688 (-) True AMCG00004345
TU8946 other downstream 1140573 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 3670856 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6151157 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8105533 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 8556140 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 981504 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2767516 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 2928715 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 3345225 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3520486 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile