RNA id: TU9174


Basic Information

Item Value
RNA id TU9174
length 2400
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00004336
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43402953 ~ 43450255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGCCCCCCTGATCTTATTCCCATAAACTTTGTGACATACTCAGAAAAGTTGCCAGAGAACCTCCAGATCTGTTAGACAAAAGACATTTTCCCATAGTCCACCAAGGCTTGCGTCTGTGACCTGCTGACCGCTGCTGAAGCTGAAGAGGCCAGAGCGAACCCGAGGCCGAGGAAGCAGCAGGATGGAGTAGCGGTCTTAAAGCTCATCCACTGTGCCAGGCCTGAGGCTGCCACCTCTGGGAGGAGACCCCCACAGCAGCCCTGCACAGAGCCACTGACAGCAGAACCCTGTTCACCATGGATTTGGCGAGCAACAGAGGCCTCAATCTGCTACTCAACTTCCTGCTGATTGTCCTCGTTCTCATACTGATGCTCATACTAGTGAAGCTCATGTGACAGCCCTGCCGCTGAGCAGAAATGACTTAGTGACAAGACCCCGGCGGACACGGTTTGTGCATGCTCACCCTGCAGAGACCCCACAAACTCCCCGCCTGCCACTTCAGcctagaaaaagaaaaaataccgCTTTACGTGTTTGTAGTGCCGAAGACAGTCgattcatacatttgtttaaaattaaaacacagctttacattttaggacagcccaAAAGGAGCAATAAAAGCAGGCAGGTTGGTTTTACTGGACAACTTAAAGCCCTTTCACAAAAAGATACTTCAAATTGAAAGCTAAATAAACCACCAATATAAgattttttattactattacttttaTATCAAGCACAAATTACTGGTTCTGGATTTGGCAAAAAATCGAGAAATGTATACCCCAAGAAGTTTCTGATcaagataaattaaatatacatcaacctgttttaattcagataggaaattgtatttgttttccagttaaGTCGTTTGCACACAGCTTATAGCAACCTTACAAGGatcataataaaattaaaccgAAGAAAAAACTGTCAGCTTTAGCAGCACTTTCAAATGAAGTCTAGAACAATCCCAGTCAATGCGAGAGTCTCCCTCTGGTGGCAAAACTTAATATCAGTAAGGAAGTTAGTATAATTGTTAGATGCAATGACATCTTCTAAGTTCGTTGATGAATGTGCTGATCTACAATCGCTGAGTTGTTGCAGTGACGATGACACTTGAGATCAGATGAAGATTCTTAGTTTAGGAAACACAGTTCTGTTACATGTGCCAACCTTTTTATATTAGTAAGATGACGTGGATATTTTAAATCATCTGGGCTCATCCCCGTGGCCAACTTGCCATTTTTCAAATACCATTTCCCCTACAGCTGTTAAGGATTCAGATCGTTTGTGTGtggctttattttttacattttctttgtttttaatttgtactgtGATGCCTTTTCTATATCAACCCTTACTACATACTGCTCCTGTTTCCAAGCCGTGCCCTGTTGTATCCAGGTGTGTTACAGCTGTGGAGTTCACCTCTTTATGTTTTAGGGAACGCCAGTACAGCAGCTCCGCCAACTGCAGCTTTAATATTCACAGACCCACTGATGTATGTTTTACACACATCTCTCTCCACTTGCAGACACAAACGGAACAAATATATCTCTGTGCAGGAAAATTTGTATGCCTCTTTTGTTGCTGACAGATGTAGGCCTATGTTTTGTTCCTTAAGTAAACGCAGCAAAAATGATAGACAGCTGGGGGAGCAGCCCTTTGAGCCTCGCTCTGATGCTGCAGAATTGGGCTCTGTGTCCCCTGATGTCTTGACATGACTACATCACTGCCACAGCCTGGCGCCTCACAGGGCGGGGGCTAAAAAGCACCTTGAACTATCATCCACAGTACCCCAGTTATACACATACTGATTGGAGACATTGTATGTTTACTGTGTACACTATATTTAAACTCTTTTCATTACTCCAatttgttgttaatttttttttaaatgtcatggtTTTCAGTTCTCCTCCTTAACTCCTATTTACTGGTATACAGATGCTTATTGGTGCCACTGTATAGATTAAATGTACTTCAGCAGAGTATAGAGAAATATAGCACATTTGGTCATAAGTTCATGACTTGATGACTatgtaaaataagtaaagttGTTGATCGGTAAGAATCTGTGCTTACAAGAGTAATTAGACATTTATACAAACTTAGGAAACCTTCGAGAAGGTCATGACCTCTCAGACAGAGGACGCGATTTCATAATTTAGTGCTAGAGAGAGGCCTTTAGTTGCAATAAAGTTAATCAAACACcaataatatataaactttAAACTTCCCAATTGTActgcactttatatatatatatattcttcctaaagttatattttttattatgaaatatagtCCAATAAATCCTGTTATCCATGTTGACATCtgtgaaatatatgaaaattaaaCTCCAGAGCACCGCTCTGCTTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9118 lncRNA downstream 182241 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 682001 42725912 ~ 42737850 (-) True G7336
TU9007 lncRNA downstream 700160 42692754 ~ 42719691 (-) True G7335
TU8916 lncRNA downstream 1106733 42312919 ~ 42313118 (-) True G7270
TU8914 lncRNA downstream 1154874 42264690 ~ 42264977 (-) True G7268
TU9289 lncRNA upstream 439877 43868463 ~ 43868706 (-) True G7554
TU9322 lncRNA upstream 654511 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 749060 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 907685 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 979774 44408360 ~ 44408665 (-) True G7587
AMCG00004325 mRNA downstream 384573 42975752 ~ 43035278 (-) True AMCG00004325
AMCG00004322 mRNA downstream 494052 42922676 ~ 42925799 (-) True AMCG00004322
AMCG00004324 mRNA downstream 499657 42914142 ~ 42920194 (-) True AMCG00004324
AMCG00004323 mRNA downstream 517968 42901035 ~ 42901883 (-) True AMCG00004323
AMCG00004319 mRNA downstream 667034 42738503 ~ 42752817 (-) True AMCG00004319
AMCG00004333 mRNA upstream 38583 43467169 ~ 43485249 (-) True AMCG00004333
AMCG00004337 mRNA upstream 56683 43485269 ~ 43514436 (-) True AMCG00004337
AMCG00004334 mRNA upstream 91393 43519979 ~ 43539410 (-) True AMCG00004334
AMCG00004339 mRNA upstream 164567 43593153 ~ 43604125 (-) True AMCG00004339
AMCG00004341 mRNA upstream 177283 43605869 ~ 43608735 (-) True AMCG00004341
TU8946 other downstream 1040445 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 3570728 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6051029 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8005405 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 8456012 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 1092328 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2878340 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 3039539 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 3456049 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3631310 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile