RNA id: AMCG00004337


Basic Information

Item Value
RNA id AMCG00004337
length 468
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00004337
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43485269 ~ 43514436 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTCTGGCAGACTCCCAATCACAGAGCTATAATGGAACACAAGGAACTGTTAAAGGTACCATGGGACTGGCAAATAGCTTCATGCCAGTGGTCATCAAACGAACTAGTGCCACAGCTGTCAACCTGTCCCTCTTGACGGCCGACCTCTACAGCCTCTTCTGCGGCCTGTTCCTGTTCCAGTATAAGTTTTCAGGCCTTTACCTCCTCTCCTTTTTCGTCATCCTGCTGGGGCTCATCCTgtactcctcttcctccacctATGTGGCCCAGGATCCCCGCGTCTACAAGCAGTTCCGGAACCCTGCGGGACCCAACACGGACCCCCCGGCCTCGGGGCCCCTGGAGCCCTCCGTCACCTACACCAGCCTGGGGCAGGAGACCGAGGAGGAGCCCCGCATCAGGGGGCCACTTGACTTGACTCCACGCATGCGCCACCGCAGGATCATCCCTACACCCATTCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9175 lncRNA downstream 56683 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA downstream 56683 43419851 ~ 43428586 (-) False AMCG00004336
TU9118 lncRNA downstream 247659 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 747419 42725912 ~ 42737850 (-) True G7336
TU9007 lncRNA downstream 765578 42692754 ~ 42719691 (-) True G7335
TU9289 lncRNA upstream 354027 43868463 ~ 43868706 (-) True G7554
TU9322 lncRNA upstream 568661 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 663210 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 821835 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 893924 44408360 ~ 44408665 (-) True G7587
AMCG00004333 mRNA downstream 20 43467169 ~ 43485249 (-) True AMCG00004333
AMCG00004336 mRNA downstream 35014 43424197 ~ 43450255 (-) False AMCG00004336
AMCG00004325 mRNA downstream 449991 42975752 ~ 43035278 (-) True AMCG00004325
AMCG00004322 mRNA downstream 559470 42922676 ~ 42925799 (-) True AMCG00004322
AMCG00004324 mRNA downstream 565075 42914142 ~ 42920194 (-) True AMCG00004324
AMCG00004334 mRNA upstream 5543 43519979 ~ 43539410 (-) True AMCG00004334
AMCG00004339 mRNA upstream 78717 43593153 ~ 43604125 (-) True AMCG00004339
AMCG00004341 mRNA upstream 91433 43605869 ~ 43608735 (-) True AMCG00004341
AMCG00004340 mRNA upstream 120711 43635147 ~ 43671248 (-) True AMCG00004340
AMCG00004344 mRNA upstream 211236 43725672 ~ 43734731 (-) True AMCG00004344
TU8946 other downstream 1105863 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 3636146 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6116447 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8070823 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 8521430 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 1006478 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2792490 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 2953689 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 3370199 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3545460 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU174238 True 1682 lncRNA 0.51 8 CI01000029 3396845 ~ 3490373 (+)