RNA id: AMCG00004338


Basic Information

Item Value
RNA id AMCG00004338
length 4727
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00004338
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43625615 ~ 43631896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttctctctctctctccttacaGGAAAAAGAGCTGGAGGCGAACAAGAAGGAGAAGGTGAAAGAGGTGAAGCTGGAGGCGGAGGTGAAGCTGCTGAAGAAAGAGAACGAGGCTCTGCGCAGGCACATCGCCGTGCTGCAGGCCGAGGTGTACGGGGCTCGGCTGGCGGCCAAATACCTGGACAAAGAGCTGGCTGGGAGGGTGCAGCAAATACAGCTGCTCGGCCGGGATATGAAGGGCCCAGCGCACGACAAGCTGTGGAATCAGCTAGAGGCAGAGATTCATCTTCACCGGCACAAGACGGTCATCCGAGCCTGTCGGGGCCGCAATGACCCCAAGAAGCCCATGGCCTCTCCAGTAGGACATGACACGGATGCATTGAAGAAGACTCAGGGCGTCGGGCCGATCCGTAAAGTTCTGCTGTCTAAAGAAGATCACGAAGGGCTTGGCATTTCCATCACAGGAGGCAAAGAGCACGGCGTTCCCATCCTAATATCGGAGATCCACCCCACCCAGCCCGCGGAGCGCTGTGGGGGCCTGCATGTGGGCGACGCCATCCTCGCTGTAAACGGCATTAATCTGAGGGACGCCAAGCACAAAGAAGCTGTCACCATTCTGTCTCAGCAGAGGGGCGAGATTGAGTTCGAGGTTGTGTACGTTGCTCCGGAGGTGGACTCGGATGATGAGAACGTGGAATACGAGGATGACAGCGGACATCGCTACCGCTTGTACCTCGACGAGCTGGAGGAAGGCTCGGCGACAAACCGCAAAAACAGCTCTGCAGACACTGCGTCGTTGCAAGCCCTGGAGAAGAACTCTGTGAGCGACGGCGTGGAGAACGGAGACACGGGACTCTCAAGCGAAACGCCGTCAGAGGAGATGACCCCCAAGCCGGCAGATTCTGCCAAGAGCTCGTCATAGGCAAGCTATtgagaggagagaagggagggaaggactttgtatatgttttaaataacagaGTTTTGTACTTTATGAGAATGGACGGCACTGGAGTCAACGGGAGAATGCATGAACGTGAGGCAAGATGAATGCTGTTGCTCTGGTACCACTTCAATGCAGAGTTAATGTTACTGTCTCTGTTTCGCAGTAATAAGCCATACAGACAACATAACAAAAGCTGTCATATTACTGAAGCTCTGAAAAGCAGGACATGGAAGGATATTGTAGTCTGATGGACAGTCTTAGATGTAGTGTGTGATAGGCCCTGAATGGTATTAACTTCCCCGCCCCTTCATTGTTTCTCGTGTCGCCCATGTCTGCTGTTACTGACCCGCTGGGGCCTGTTGCAGAGGCCTGATCCAGTAGGTTATTGTACAGGAAAGAATAATTGAAGTTGATTTAATTCCCTTTGTACATATTATACAAACTTTTAAAGTATTGATCTGTGCACTTCTCTGACACAGCTAGATTTGGAGATAATAAGTACCGTCTCCTGTCTATTTGAAGTTTCAGAACAACGTTACCTGTTGTATTTGGACTGCATTTATTTCCTTCTGTTGCATTCTGCTAACGGCATACAAAAATGTGACCTGAAGGTGTGGCAGCAAAGAATGGTTTCCAGTCACCACAATGATGTGTGTCCTGGGGGTTTCAAAGCAGGCCacgttttcagtgtttttctatCTTATGTATTCTTATGCTTCTTATTCGAGTATGTTAAGGAAAGGATTTTGACAAAGGATTTTAGTAGATACATAGATTTCTCTAATCTTTATACAAGTCTTGAAGCAGTGTTTCAGAGAATGGAAGCATACATAACCGATATATATTCCCCGGCACACATTAGTGTGTGAGGCTTAGGTATGCAGTGTCAGCCTGGTGCAAATGAATCGCAGAGTAAGTTAAGTTTCAGAACATATTCCCACGTGGTGCCTTAGGCTCAGTGCAGCTGGGCGATggattgcaaaaacaaaaatcaaatgagCAAAAAACCTGATGAAGACAAATCTACCCTTAATTCAATAATAGTGATATAGTTGGGAGGTAATACAGTGAGCACTAGCAGGTTCTGTACATGCTGTCAGAAGTGAGTGCATCCTACAGACTCCCTACTCACTGCCTGTAAGGCTGCCAGAGACTCTCAATTACTACGAATTTgatatgcaatttttttttcttttactttattattttactgacaGACTTCTGTGCCATGGATACTGCTATAGTCATACCTTTTTTCTCTGCtatggaatacaaaaaaaacgtAATGGTGCAACTACATTTAGTCAGTCATCTTGTTTCTACCACCCCACAGTGCTAGCAAGATATTACTGTGCAGTAGCTGCTATGCTGCTGAAAACCTGTATCTATCGTAAGAAATAGAACAGTATGGTGTTGAATACCCAGATGGAAATCTGCTTTAAGACCAAGAAAGCACACTCTCCCTCATTATTTGCATCGCTGTATCGTATAATGTGAAAAAgtgcagtgtatttattaattttgttagtACAGTTCTACATATGAAGGGGCATCTTCTAGTCACTGTCATTTTTTGTCTTTATGCGGAGTGAAGTGTCATCATAACTGTTCTTCCACTACCcttgatatttaatattaagtGCCCTCTCCCACCTACAGCCAGTGCAGTGATTTGACACCCCGTTCACTGTGGTCTTTTTCTCGCCCAGTGCTGTCTTTTAGGGAAAGGAGTTTAAAAAATCCCCCATCCAAAGACATGTACACATCCAGTAAAAAGCCTGGATATGCTAATCTGTTTCAGGGCTACACGGTTGAAGCCTAGGGACGAAGGAagactgtaaaacatttaatttcttataatgtataatgaGCTTTAACAGCCACAATGCAGCACATGAcgtataattgtattattttaaaacgaGAAGTAAACATAGGCATTTTAGTTAAAAGCAATAAACTGATGTATTACTACTACAGCACAATGTAACACAGTTATACTGGGCCATTTCAGAGCCTGTAATGAATctcttatttatgtataaatatatttgttgttttgaggTTACTGATTACTGTACTTCTGTGGGTTCATAACCCTCTCTTGGTATTGAGGTCTATATCCAgtattgtcatttatttctatacgtcaatggttttgtttgttttagtagtTTGATATCAAGGTGGAAATGGCAGATAGCGCCCACAGAAAGAGAAACCGATGTGTACACAGTTATCTCCATTATCTTCTCTGTTCTGTACTTGAACTTAGTCAGGTTTATAAAATAGctgaaatttaaaaacacactgactaTCACAGCATTTTAGGGCTTTTTCTGTATCGGTATCTTGCTTGTGGAACGACAGGCTTTTACATGAGAGACTTTGCCACTGCATGctgttcatatattttgtactgtttaCCAGCTGAAGTGTTTTTGCTTTATAGAACcaaatctgttttaaatgtattgatttttttttagcaaaacaCTTTTCCCTAATTCAtcactggattttttttttcttaaaaaaagagagaaatgtgaTATTATTTGGTCTCATGAAGTtgtttttaacttgtattttctgttctaatatatatttcagtaataCACATACCATATATGcgatgtttaaataaaatttaaatgtatttcagtttcttAAACCCCCCTTTCAGTTTGTACCTTAGTATCGTTTCGGCCTTAACAGTGTTGTAATTGTTGCCAAAGCCAGTGCGAAGTGAACTTTGACATTCTTCAAAGTTCAATGGCGTCTCCTCTGGGTCCCATTGGAGACGCTAGTGATTGTTGAGAGGGTATAAAAATAGTGCTGTCGATACTGTCCCATCACACATACTGCTTTTCATACCATGTGTTCATTTAAATGCTAACGCAGATGTAGAATACAAGTTGAAGTTGTATGTGCTGTACAAATGACAGTGCTCCAATGAAAACGCAAGAAATTTGGAAAGGTATTATTTTATCCCTCTGTCCGTCCCTTGTCATTATAATGTGTGCACTGTGCAGGTACAAGACACTGCAGGCCTCACCATCTGAAGGATTTTCCTGTAGTTTCCGGTTACACATTGCCACCAGCGTGTTATTGGAAGGTGGTTTACAGAAATGCATCTCGCTGGTCTCTTAATCAGTACCTATTCAGAACACTGCCCATTATAGACTTGGATTCAAACGTATTGCTCACTTGGGTGCTTTGAATGAATCATTGCTATTACAGCAACGATTTTCTCAGCTGCCAATGCGGATGTGTTGGGTAAGACATCTTTCTGTTTTACCTTCACTTTCgtctttattttcacacaatCTGCCGAGATTGAAATCCAGTCCTCAAGTGTTATGGCTTCaaaattattctgttttctgaTGCATTTGATTGCCATATTCAGGAGAACTTCCATTTTCAGACTTGGTTTTTGTAAACGCCCGGCCTGAAAATGTCAGTTCCTGTTTCTTGATACCTGCAGTATCTGTGaaatagtttatataaaacaacagATCCTGGACTAAATATAGTATCTTATTccacttaatttgaattttcTACCTGGTACCTGGTTTCCCCATTAACATTCAGGTTTTCACTATATTcttgtttttagaaaacaaaaaattacactcggctggtttcacagaccttgattcggacctgtgaaataaaaccttttaaGTTCAAAAGAGCCAAAGagacattgtttatttgtaatgctGACAGTTTAATTATTCTGTCTACTTTGTAAGCACCATGAACTCTAG

Function

GO: NA

KEGG:

id description
K24054 GOPC; golgi-associated PDZ and coiled-coil motif-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9208 lncRNA upstream 30537 43591750 ~ 43595078 (+) True G7485
TU9148 lncRNA upstream 278656 43346350 ~ 43346959 (+) True G7441
TU9117 lncRNA upstream 387962 43235818 ~ 43237653 (+) True G7418
TU8944 lncRNA upstream 1149729 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 1245654 42376625 ~ 42379961 (+) True G7288
TU9307 lncRNA downstream 446449 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 451202 44083098 ~ 44088037 (+) True G7569
TU9326 lncRNA downstream 704555 44336451 ~ 44336681 (+) True G7584
TU9368 lncRNA downstream 898444 44530340 ~ 44543143 (+) True G7614
TU9402 lncRNA downstream 942435 44574331 ~ 44574997 (+) True G7638
AMCG00004342 mRNA upstream 14520 43610781 ~ 43611095 (+) True AMCG00004342
AMCG00004335 mRNA upstream 90957 43526980 ~ 43534658 (+) True AMCG00004335
AMCG00004332 mRNA upstream 214519 43380670 ~ 43411096 (+) True AMCG00004332
AMCG00004329 mRNA upstream 262928 43350779 ~ 43362687 (+) True AMCG00004329
AMCG00004330 mRNA upstream 286755 43329372 ~ 43338860 (+) True AMCG00004330
AMCG00004343 mRNA downstream 39124 43671020 ~ 43721979 (+) True AMCG00004343
AMCG00004346 mRNA downstream 163325 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004351 mRNA downstream 778703 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004354 mRNA downstream 866532 44498428 ~ 44498907 (+) True AMCG00004354
AMCG00004353 mRNA downstream 879951 44511847 ~ 44512326 (+) True AMCG00004353
TU9000 other upstream 934506 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1409253 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 2118384 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 6625457 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6733869 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2330114 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4514992 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5300554 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6519368 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7111895 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile