RNA id: AMCG00004339


Basic Information

Item Value
RNA id AMCG00004339
length 2891
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00004339
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43593153 ~ 43604125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCAGGGGCCTATCGCCGAGCTCCATGTAATACTGCGAGTTCAAAGAGGAAAGGTCAAAGTTTGAAAGATGGCGGCCGGCGCACTGAGGTGTTGGCAGTGAAGTAGCTGGCTTCCCCCGACCAGATAGATGTGCGTCTGTCGCTTTAAGGACTGAAATGCCGCACAGTGTGAATTCTTGAGAAAGAACAAGGTCCGTAGAAACGCGTGTGGGACTCTGTGCGATGGCGGTAGTGTACGAGTTTGTGTGGCGGCTCCTGCATGCTGTCCTCCACCTCCAGCGGACGCTCCTGACTTGGTTCCGAGTTCGGATATGGAACTGGAACTGGCGGCTGTGGAAGCGAGCCGTGGCGGCGGTGCTGGTGCCGGTCACGTTTGGGTTCCACAACCACATCCACAACAACAAGAAGCTGGTTCCGGCAGCCGGGAAGAGGAGCTGCAGGCGGGTCCGCTGGAGAGCCGACGGGACGTCTCTGGAGAAGCTCCCGATGCACGTCGGCTTGTTGATCGCAGAAGAGGAGCCGTGTTACACAGACATTGCCAACTTGGTGGTTTGGTGCATGGCAGTAGGGATCTCTTATGTCAGTGTCTACGATAATCATGgtATCTTCAGGAGAAATAATTCCAGACTCATGGATGAAATCCTAAAGCAACAACAAGACCTACTTGGTCTGGACAGTTCAAAGTACTCCGTTGAATTTTTAAACTATATTCTGTCGTGTCAAGCTGCTGTGAAGGTGCTCTCCCCAGAGGACGGGAAGCCCAGTATAGTGAGAGCAGCGCAGAAGCTGTGCCAGTTGGTGGagcagaaggagaggagagcCTCAGATATAGATGTAAATATGGTGGACTCTCTCCTCAGAGGTACGAAAAATCTGCCAGATCCCGACTTAGTGCTAAAGTTTGGCCCCGTGGACAGCACGCTAGGATTTCTCCCCTGGCAAATCAGACTAACAGAGTTTATTTCTTTGCCTTCCCACATAGACGTCACATACGAGGACTTTTTCTTTGCGCTGAAGCGATATGCTGCCTGTGAGCAACGTCAAGGGAAGTGACCACTGGGGTGTACTGGGCACCAGGAtgcagtaaaaacacaaaaaaggggaCTTGCTGTCTCTTCAAGTTTACAAGCACCCAAGAACAAATACATGCCTCGCTCAGCGTTTTCATTCATAATTTGAGTTTCTCAAGGAAAGGCTAATAAAGTGTCTTATTACCTCTCTGTGGATAAATGGGCGTGTCTGTAGCAGTCTGGAGTtagtttaaaagcaaaacttgttttatttggggAATGACAAACATTCTGTTGGGCATGCCTCATTTTATAAAGACATCTCGTTCTTAACTGCCCATCAAGCAGTGTGGTGCATCTGCTTTGTTCATCTGCttggttttttttaattggaatggacctacatttaaaaccaaccaacattttatttacatttttggtcTGAAATGGTATATTGTAGAGCGTTTAACTttgtataatgcattttttttttttttaatcaaacatgGTAACTGGATTCTCAGTGGAGCTGTTAGTAGTAGGAATATGTGAGACACAGAAGGTACACAAATGTACCAGTTAAAGGGGTACTATGATGCAAGCTCCCAACAGTACCtctgtgaaattattttgtatgcaaaACATGTTAGAGCACATGGCAGAATTGTCATTCTGTGGAGAGACTCAAGTGCAGCAATGTTTAGCCCTGTTAGCAGAGTGAACGTGTAGTTATTGAAGGATTTCCTGGGGCTTCAGAAGACTGATTTCAATTACAGTAcataatttgatttgaaaaaatgCCGTCTTTGAGAGTCAAAGTGAAGAGAATCCCTTCAGAAGGGCCATTACATGactatttaatcaaattaaaacaacttatttattagtttttcccATTTTGTGACTGGTGGACATGGACTGCAGATCTGCGAGTCATACTGTCCTCTGGTAGGGAATAATTCTCCACATGAGTCagatactttttattttatgctggTAAATAATAAGACCTAATAATGCAGTCTTACTGTCCCAAAGATGTGGAATTCTAGAtgcttttagttttaaaatgttttgcactaAAGGCTCATCACAGTGCAGACATGCAACTCAGTGTGGTAACTCAGCTCTAACACATAGAAACACACAAAGCgtaaaatagtaaaatgtttAGATGCATCAAATCGCTTAGGCTAAATGCCTTTACAAATCCTCTATCCCACCTTTGTTgaagtttttctttcaaaaatgaaCACTGAATCTTCCAGTTCCTGTAGCATTATGATGTAGTCGTACTGTCCCTGCGAGATCATcagaactacattttttttttacagtaaccTTCAACCCCTTAAGGAATATATGGCACACCTAGGGTCTCACTTTCATTGCAGGTTCCAAATCAAgataaaaacatcttcaataACAGCTTTACCACTAAGCCATTGTTGCAGAGAGATGCTATACTCCCTTCAGGTTACCTAAATGAATGGGACAGCCTGTAAAAAGGAAGGTGGAACCATAGATGacacatctttcttttttgtgtacTCTAGCTCATGTAAAACTCTTTGCTTTGTACAGAAAGACCAATCCGTCCATTTCCTCCATATTATTTTATCCTGACATGTTAAGTGAAAAtgcaaccattaaaaaaaatcaagaccATGCACAATTAACAATAGTCAGTAAAACAGTTGTTCAAAGCACTGAAATTCAGCAGTCTGAAAATGATAATTCATGTATGCAGTGGgtgtcaaattataatttagctTTGTATTTGAAATCTGAGCACTGTACTTTTAATAGGTCACATTTGAAAAGCTTCAAATAatatggactttttttttttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9175 lncRNA downstream 164567 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA downstream 164567 43419851 ~ 43428586 (-) False AMCG00004336
TU9118 lncRNA downstream 355543 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 855303 42725912 ~ 42737850 (-) True G7336
TU9007 lncRNA downstream 873462 42692754 ~ 42719691 (-) True G7335
TU9289 lncRNA upstream 264338 43868463 ~ 43868706 (-) True G7554
TU9322 lncRNA upstream 478972 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 573521 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 732146 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 804235 44408360 ~ 44408665 (-) True G7587
AMCG00004334 mRNA downstream 53743 43519979 ~ 43539410 (-) True AMCG00004334
AMCG00004337 mRNA downstream 78717 43485269 ~ 43514436 (-) True AMCG00004337
AMCG00004333 mRNA downstream 107904 43467169 ~ 43485249 (-) True AMCG00004333
AMCG00004336 mRNA downstream 142898 43424197 ~ 43450255 (-) False AMCG00004336
AMCG00004325 mRNA downstream 557875 42975752 ~ 43035278 (-) True AMCG00004325
AMCG00004341 mRNA upstream 1744 43605869 ~ 43608735 (-) True AMCG00004341
AMCG00004340 mRNA upstream 31022 43635147 ~ 43671248 (-) True AMCG00004340
AMCG00004344 mRNA upstream 121547 43725672 ~ 43734731 (-) True AMCG00004344
AMCG00004345 mRNA upstream 174024 43778149 ~ 43789688 (-) True AMCG00004345
AMCG00004347 mRNA upstream 394792 43998917 ~ 44002983 (-) True AMCG00004347
TU8946 other downstream 1213747 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 3744030 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6224331 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8178707 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 8629314 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 916789 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2702801 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 2864000 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 3280510 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3455771 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile