RNA id: AMCG00004342


Basic Information

Item Value
RNA id AMCG00004342
length 315
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00004342
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43610781 ~ 43611095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCGACGCCCGGCGGTGTCTCCCCAGCCTCTCAGGGCTCGGCTCTTACTGGTCCCGGTTCCGGGATGACAATGTTTCGCTGGCTGGAGGTCCTGGAGAAGGAATTTGACAAAGCTTTCGTGGACGTGGATTTATTGCTCGGAGAAATAGACCCCGATCAGGCTGACATCACGTATGAGGGCCGCCAGAAGATGACCAGCCTCAGCTCCTGCTTCGCCCAGCTTTGCCACAAAGCACAGACCATCTTCCAACTGAACCACAAACTGGAGGTAAATAAGCGCCAGCAAAGCAAGTTTAAAGTGCTCATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9208 lncRNA upstream 15703 43591750 ~ 43595078 (+) True G7485
TU9148 lncRNA upstream 263822 43346350 ~ 43346959 (+) True G7441
TU9117 lncRNA upstream 373128 43235818 ~ 43237653 (+) True G7418
TU8944 lncRNA upstream 1134895 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 1230820 42376625 ~ 42379961 (+) True G7288
TU9307 lncRNA downstream 467250 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 472003 44083098 ~ 44088037 (+) True G7569
TU9326 lncRNA downstream 725356 44336451 ~ 44336681 (+) True G7584
TU9368 lncRNA downstream 919245 44530340 ~ 44543143 (+) True G7614
TU9402 lncRNA downstream 963236 44574331 ~ 44574997 (+) True G7638
AMCG00004335 mRNA upstream 76123 43526980 ~ 43534658 (+) True AMCG00004335
AMCG00004332 mRNA upstream 199685 43380670 ~ 43411096 (+) True AMCG00004332
AMCG00004329 mRNA upstream 248094 43350779 ~ 43362687 (+) True AMCG00004329
AMCG00004330 mRNA upstream 271921 43329372 ~ 43338860 (+) True AMCG00004330
AMCG00004331 mRNA upstream 293373 43295652 ~ 43317408 (+) True AMCG00004331
AMCG00004338 mRNA downstream 14520 43625615 ~ 43631896 (+) True AMCG00004338
AMCG00004343 mRNA downstream 59925 43671020 ~ 43721979 (+) True AMCG00004343
AMCG00004346 mRNA downstream 184126 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004351 mRNA downstream 799504 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004354 mRNA downstream 887333 44498428 ~ 44498907 (+) True AMCG00004354
TU9000 other upstream 919672 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1394419 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 2103550 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 6610623 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6719035 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2350915 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4535793 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5321355 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6540169 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7132696 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034899 False 2153 mRNA 0.50 9 NC_007131.7 42246948 ~ 42281434 (+)
eurasian perch (Perca fluviatilis) TU37849 True 418 lncRNA 0.44 1 NC_053114.1 19115987 ~ 19116404 (-)
mexican tetra (Astyanax mexicanus) TU37849 True 526 lncRNA 0.60 2 NC_035899.1 54663719 ~ 54665970 (-)