RNA id: AMCG00004343


Basic Information

Item Value
RNA id AMCG00004343
length 8386
RNA type mRNA
GC content 0.44
exon number 38
gene id AMCG00004343
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43671020 ~ 43721979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACTCTTCCGGGTTTGCGCGGGCGGCACCCAGCGGCCGCTCGACCCGTCCGACCCGAGGGGCTGCACAGCAGGGCGACTGCCCCCACAAAGACATCGACCACTGCAGGCAAAATGTTTCCAAGCCTTCATACACAGTGAAGGATCTGTACCCTCACACAGAGTACATCTTCAGAGTCTGGACCATAACGCCTCAGAAACAACTCTGTTCCCCGGCCAGCATCAGCTATTTTACAGCAGGTTATGGAGTTTCCTCTAGTGCGCCGGTGATTGACAGTGCTGAGACCCTGAGTCCCGACACTGTGGAGGTCAGCTGGTCACCTCCTCCACATCCTGGAGGTCCAATCATTGGATATCAATTAAAACTCCTAAGTGAGGAACAGTCTTTCAGGAAAGTTGCAAGCAGCCAGGacttctgctttattttttccccaacacTCCCCAATACTACATACagCGGAGAGGAATGTGACAACGCCGctGTCAGTGATGAACAATGGCTGTTTCTTTCAAGAATGGCCTCATTGAGGAGAAAGAAAGTGgcagatttatttactgaagCAGACTGTCTTCCTCCTGGACAGTTACATCACAACATAAGAATTGCTATACATTACATCTCCAAGCAAATTTACTTCTGTGAAGGAAACCACATCTGGATGAAAGGAGCACTGAATCTGTCTGACATTTCAGAtctaaaaaatgtgtatgctgGCCCTGAGGAGATTAAATCAGTATCAGTGGACTGGCTATAcaagaagatttattttgtcatggGTGGAAAGGTCTGGTATTGCAAACTAGATAACTGCAACAATACAGTGGACTTCAGTCTTACCTATCATGGATCAGTCACAAGAATTGTTGCAGATCCTTACAATGGATACATATTCTTGCTGATGGATGATGGCATTTACAGGGTGAATCTCCCAGAATTCCCAGGGCAGAACAATGACACCCACCAGGCTGTGAGAAGCAATGCAGTGCGAGATTTTGTTGTCAACTATCAGTCTAAGAGactgttgtattttaatgagacaGACAAATCTATTTCATCTGTCTTTTTAGATGGCTCATTGTTTCACAGCATGCGCCCTCCTCTGAAAGCAATACAGACACTTGTGAGTGTTACATATGAGCACAACCTCTTCATGCTCTCAGATGGAAAGTCAGTTTACCAGGAGACAAACTCTGGTGACACATTTTTCTACAATGAATACATGGTAGACTGTGATTTGGatagtattgatttatttgggtTTGACAATCTACACTTTTTTAGTGAATCCAGTCAGCCATATCCATTACCCAAAAAACCCAATCACCTGAAGGTCTTGTTTGGATCAGACATGGCTTTGCTAAAGTGGGAGACACCTTTAGCAATGATAGGAGCAAGCCCCGCTGCCTGGCAAAACTGGACGTACAGTGTCAGGATATCTGCTCTGAACCTGTCTGTAGTGCAGGAGTACAGGGATATTGTTGACACTCAGACTGCAGTTCAAGGGCTAGAAAGCTCCAGTTCGTACAGCATGGCAGTCTGGGCTGAATCTCCAGCAGGAAGAAGCCATTCTCCTAGTGTGTTTGAGGGAACAACACTGAAAAAAGTGGACAATGATCCTTACATCATTGCTGCAGGAGAAAAGGGCCTCTGGAAGCAGAAACTGGAGAGTTTTGATTCACAGTGTTTAGTATTTGCAGATCTTAAAGAAGTACAAGATATTGACTGGTACAATAGCACCATCTTCTGGAGTAACACATCTGGATACATCCATGGGATGATGATGAACCAGAACAACAGGAGCTGTGTGCTATCTGCAGTTCACAAAGCAAGTGCCTTGGCTTATGATTGGCTGGGACAGCATCTATACTGGGCTGATCTAACTTCAAGCATGataTACAGAAAATCTATGATATCTGGGGTTCGACAAGTCGTTACTCAAGGCCAATATTTGGTAAGGGATTTGGCCATTGACTCtgttaatggttttatttactgGACAACTGCATACACTGTGGAGGGTTCAAGATTAGATGGGAAGGACCATCTCACCTTCCAACAACTGCCATCTTCTGGGAAACAGGCAACTGGTTTCACAATAGACATCACTGAAGGGCATTGCTACTGGCTGGTTCAGGATGACTCAGTCTTGCACTTATACAGAGCCAGTCTTCTGAATGATGGGTTTATGGACATCGATATAATGGAATATGCATCCTGGAGTTCCTCTTGGATTTCGTATCATTCCTTGGCATACTACAGCGGGAGAATGTTCTGGCTGGACAGGGATGGCATGCTTACTGTGCAGGAATTAAACAGCAGCAGGAGTGTTGCTtactctgcagacacacagatgaCAGCTTTTGTCCTTTTTCAAAAGACACTCAAGCCTCTCCCAGATGGATTTGTTTCTCCTCCTGTTGTAATACCACAGCCAGTACCCAAGACATCTATCCAGATTACAGGAAATCATTCCATCTTTAGGGTATTTTGGGAGCCCAGCAGCAATGTTGAGTATGGGACTGTCTTCTATTGTGTGGAGTCTGGAACTCTACCAAACTGGCAAGGTCACCTAGGTCTGAAGAGTGGCTTTGCCAGCTTTTGTCTGGCACGGAATGTGTTGTCTATGCCAGTGTTTGAAGTGAGAGGTTTGCGGCCTTACAGCAGGTTTGATATAAGCATCACACCTTATACCTACTGGGGAAGAGCCAACACAACAACTGCAATCTTAAGAGCACCTGAAGGAGCGCCTTCTGCTCCATTGAGGCCCAGGATATTTGTACTGAGTGCAGGTTCACTGAGGGATTTAGAGATGGTCCAGGTGGAATTTCGGTGGGACACACCTGAAAAATCAAATGGAGTCATTGTAAAATACCTTATGTATTACTCTGTTCTCAACATAACTCACATCAGTAGCTCATCCATCATATGGGAAAAGAAGAACATATCAGCGTCTGAGACATCATACAAACTCTCTGATGTGCAGCGTGGTTCTGTGGTTCAGTTTCAGGTTCAGGCATTTACTTCACTTGTTCTCACACCAGTCCCAAGGATATTAATTTCAGCAGACAGAAATATTTCCCTCCTTGATCTCGACACCAGACAGGCTGTTCAGCTGGTTACCCTTGGAGGGAATGCAGCTCTTATTAGCTCTGGAGTTGATGGATTTCTGTATGACATTCATGATaacatgcttttcaaaactAATGTAGAGGATGGCTCAAGAGTAAAgATACTTACAGACGATCGGCTGATTAAGGCTGTGGATTTAACAATAGACTGGATTGGGAGGCGTCTATTTATTGCACCAGACATCACACTGAATTACACACAGCTGTTTGTAATTGATTTGGAgctaaaaaacacaacactggaAGTCATTAATATCCAGCAAAACCACACACGCTCTGCCCCATATGCTCTTGCTATGTATCCTCTACTCAGcCGTGTCTACTGGGTGGAGAGTTCTGCTGTGGAGAACAGGATTGCATACTTCAGTTTGAATAGTCAATCTGTGCACTATGTTTTTAGGAATCCAAACGAAACTAAAGATTTATCATTTAACAGACAATCCTGTAACTGCACTGCAGCTCAATTCAAGTTAGGTTTAGCCATGGCCTTGGATACATCACACCCAGAGAATGGCAACATTTATTTCTCCACACAAATGGGGGAAATCTGGGTTTCTGACTTGGAGGGATGTTGGTGTAAACATGTGACCAGAGTTCCTTTGCAGCCTGGTGGAATCATCAGGAGACTAGCTGTTGATACAAAGTTTGTTTACTGGACAGCCATGTCTGGCAACAATGAGACTGTGTTTCACATGGAGAAGTCAGGGGACCAGCAGGGGGCTGTGTTCACTGCGAAACAGCCAGTTCACCTGGCAGTTTATAACTCACAACTGCAGCATTACCCAGataaGAACTGTTTAATACCAGCTCCAAGCAAGGACAAACCTAGAATAATTAATGCTTCAAATAGTAGCTTTTTACTTGACCTGCCCTTGAGCAGACCCCTCCTTCAGTGCAATGGTATAACTTTGCCTACACCTACATATCTTTTGCACTACGGCATAGTGCTGGACAACAGCCGTGAAAACTGCACACATGgattgcagtgcagtgttgtgGAAGcccaagaaaatatttttcatcttCAAGGACTGCAGCCTTTTACTTCTTATGTCATCCAAACGGCTGTGAAGAATCTCTATGGGGGCTTCGAGGACCAACTCGGGGAAGCAGTCATTGGCTTAACGCTGTGTGGAACACCTGTGGCGGTGACAGATGTTTCACCTTCTGTGGTTTCTGATACAGCTGTGAACATAACATGGACTGAATCTCCCAAGCCGAACTGTGCTAGTGATAAAGTTAGGTATCAGGCCCTCATAAATATGTTGGACTTTTACCCCCCAACACCTTTGACAAAAGAGGACTTTCCAGGACACAGCCTGACCTTAACAATTAACTCTTTCAGAGAGGGATCATCCAATAGCATTGTGGTGCTGGCATTTCACCCTACGGAGAACTGGTCTTCTGCCAGCACTCCTCTCCGAGTCATTACCTTCCAGGCCCCTTTGGCCCCCAAGCTGCTCAGTGCAGGCAACACCTCTGTGGAGCTGCAGTGGAGGGCTCCCAGTGACAACAGCACACGGGCCTTCTGGGTCGAACTCAGAGAGCATGTGAAAAACAGCAATTGGTTTCAGCCCCAGACTGATTGTAAGAATGGACCCGTGACTATATGCAAGCTGTTTGGGATCCTTCCAAACAGGCAGTATTTTGCACACATCAAAGTGCTTTATAGGACTGAAGCAGAAGGTGTTTCACCATCACTGCCTTTCAGAACTACTGCTGGAGTCCCAGGGAAGCCTGGAGTTCCACAGGTCTGGCATAATGGGAAGAAAATAGTGTGGCAACAGGCTGAGGACAATGGTGGCAACATCACTTTCTACATACTGGAGAGCAGGCAGGTGCGGATGAAGAGGGTTTTAGAGAATGAGACAGGAGCCGGGCCCTGGGGGCTGGTGCACAATGACTCCTGCAGCTCAAGTGTCTGCACCTGGGAAGTTGAAAACCACATGGGGACGTTTCAGTTCCGTGCGGCAGCTGCCAATTTGCTTGGTCTTGGAGAATACAGTGATGCCAGTGAAGCTATAGAAATGCACGTGTATATCAGACGACGGAAGCGAAAGGAATCCGGTGCTAACAATATATGCATCGACTTGAAGCCTGATGCGGAACTGGATCAGATCCGGGGATTAGTGGGATTAGTTGATAACTGCTATGCTGTGAGTCCCCTGCCAGACCAGTATGAGAACAGCACTCTGCCTGTGTTTCCACGGGAGAGACTCCGACTGCAGCGCTTCCTGGGCAGTGGGGCTTTTGGCGAGGTGTATGAAGGCCTTGCTGTGAACATCCTGGGTGAAGGAGGAGGGGAAACCAAAGTGGCTGTGAAGACCCTTAAGAAAGGTGCTACAGACCATGAAAAAGCCGAATTCCTGAAGGAGGCACACTTAATGAGTCAGTTTGATCACCCTAACATCCTGAAGCTGCTTGGAGTGTGTCTGCTGAATGAGCCTCAGTACATCATCCTGGAGCTGATGCGCGGAGGAGACTTGTCCTCATATTTGAGGGGAGCCAGAGAAACTACAGGCCATCATCCATTACTGAATTCATCAGATCTACTTGACATTTGTGTGGATGTTTCTAAAGGCTGTTCCTACCTAGAGAAAAGGCACTTCGTTCACAGGGATTTGGCAGCCAGAAACTGCCTGGTGTCAGTAAAGGAGTATGACGACCCTGGTAGGGCAGTGAAGATTGGAGATTTTGGATTAGCTCGAGACATCTACAGGAGTGACTACTACAGGAAGAGGGGGGAGGCGCTGCTGCCAGTGCGCTGGATGTCCCCAGAGAGCCTGATCGATGGGATCTTCACCAAGTACTCCGACGTGGCCTTTGGGGTGCTGTTATGGGAGATTGCAACTTTAGGGGGGCAGCCATACCCAGCCTTATCCAACAGTGAAGTCCTGCACTACGTCAATTCAGGAAGGAGAATGGAGTCACCCAGACACTGCCCTGAGACTTTATACAACTTGATGCTGCAATGCTGGCACAAAGAGCCCAGCAAGAGGCCAGGCTTCCGTTACATCCAGGCCCGTCTGCAGCAGCTGAGGGAGTCTCATGTGAGCTGCCATTACAGCACTGAAAGCCCGGCTGCAGCCATTAATCACGCCTTCGAAGACACATCTGAAGATTGCACTGAAGTGGATGAAGAAGGTGCCCCTGTAGTAGGTTTATCCCAAACTTACAACACTGCAGGGCTTAACTATGTGATGGTtcagacagagaaacagcaaGATTCCTCGTGTTGTTCTACTGACATCACCtaaatgaaagaaacatttgcatgttttgaaTCAACAGAAGATAAATTGCTGAAACAGAAATACTTCATTCTTAACAACACTTTGATGGCCAAATCAAATGAAGATTCATAATCTCAGCTCTTCAGACATTTTGTTAGTTGTGTCACATGATGTTCAGAAAGTTGGTATATTGCACTGTATCATATTGCAATTAGCaggttgtattgtatttaagacACAACAGATTTTGGAACACTCCAAAATACATTGCGTACTattgctaatttaaataaacttttcaaacttttttttacaagGCAACATAATGTATATTGTAAACAGAGTGAGTGAATTATGGTATGCTTTTGTTTATATCTTCTTGAACTCTACAGCATCTATAGCTGTGTAATTTGCTTAAGAATAGTTTTGAACTGTATATGTTGGTTGATTTGTGTCACCTGTCTAGCACTGCTAGAGAGGATTATAAACAGTTATCTTgggcactgcccaagggggaggggtttagCCCGTTACCAAAGGAACCTCGTCAAAACATTTGAGGGACCAATGACATAGCTGAAATGTCTGAAAGACATTCTTTGGTGCCCTCCagtgtttaaatacataaagatgcAGCTTTAAAGatgcaaacatttatatatattaggttttatttgatatatttgcTTGGGTGCGGGTTGAAAACTATGATTTGTTCAATTGCATAGACTGGTGGTCCAGTGGAAtgtgacacagaaacacacatattAAGGATGGACTAATGGTCCTCACTTCCAAATCAGAGCACTGCAGCCAAGCACTCTACACAACCTACGTATGAAGGTTAACTAACTTATCAGATATTGTAGGGCATAACATTATACATGGAGACCGCAGCACCAATCTAGCAATTGCAACCAATAGTCTGGTTATCATACCCTGGTGATCAAGCCCACCGCTCAGCCCAGTACTCTTATTCAGGCACTCTAAAGGAAAGTCTGTTTAGTGGGGATTTGGGAGGGATGATTCCTCTGCAGTGGAGAGTGGGGGCTTTCAACAGCCTGCTATGGTTTGCATTCCTCATGATGCACTATCAGAGGAAATCAGTGACACTAAATTAGATTAATAGGATTTATGTTAaggaatgttatttttatgccatcgaaaatacttttttaaaatgattaacagctttttttaaatagttcagATACCAAATTAAATCCTTAAAATCTTTCCTTAAAAAAAGAGACAATACAACAGAGCCAGCAAAATCATCATCAagggtttctgttttaaagctACCCAGAGCTTTCTGAACTGTGTTTCTACACTTAGTTCCAAGTTAGCATTTGTAGTGCTTATGTTGACTAATGTGAAAAATGCCAGTGCTGGTGGTGTGAAAATTGCCAGCCATGTGGGACATGTGCACTGTCTGCATGTCATATAGAGCTGCTTCACAACTACTGCATTAGCATTATTAACATTCCTGCACAAATGGCTGCGTAGTGTTATGATTGAAAACCaaacatcatttattttatcaagtGATGAAGAAATTAGTTACTtgtacagattgttttttaaattaaatcaagatggtttcatttttttaaagtgacgcTAAGTATCCTcaactaaataattaattgaattgatcatttttattatgaatttgaagaatacatttctaatataGTATAAGTAGGACAATAAATCAAAAGACTCAGTGATTCATATTCCTCACAAGGGTTCTGTGTAAATAGACAAAAATGGCACTAAGCAATTATGGTCTTCCAGACTTCAGTCAAACTATATGAATATAATAGGAAGCAAAAAATGTTTAAGCCCTATCAGTTGTCAGGTTGAGATGTTTGGTAAAATGCATTGCTGTGGCTTCTTGCCCAGAGGCTGGTGATAAAAGGTCAGTGGCACTTTCTGTTTGTCTAGCCAGGAGTGTAAGGTTACAGTGTGATTTATTCAtattctaaataaaaacatactgctCTGTGCCTTTCAAACA

Function

GO: NA

KEGG:

id description
K05088 ROS1; proto-oncogene tyrosine-protein kinase ROS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9208 lncRNA upstream 75942 43591750 ~ 43595078 (+) True G7485
TU9148 lncRNA upstream 324061 43346350 ~ 43346959 (+) True G7441
TU9117 lncRNA upstream 433367 43235818 ~ 43237653 (+) True G7418
TU8944 lncRNA upstream 1195134 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 1291059 42376625 ~ 42379961 (+) True G7288
TU9307 lncRNA downstream 356366 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 361119 44083098 ~ 44088037 (+) True G7569
TU9326 lncRNA downstream 614472 44336451 ~ 44336681 (+) True G7584
TU9368 lncRNA downstream 808361 44530340 ~ 44543143 (+) True G7614
TU9402 lncRNA downstream 852352 44574331 ~ 44574997 (+) True G7638
AMCG00004338 mRNA upstream 39124 43625615 ~ 43631896 (+) True AMCG00004338
AMCG00004342 mRNA upstream 59925 43610781 ~ 43611095 (+) True AMCG00004342
AMCG00004335 mRNA upstream 136362 43526980 ~ 43534658 (+) True AMCG00004335
AMCG00004332 mRNA upstream 259924 43380670 ~ 43411096 (+) True AMCG00004332
AMCG00004329 mRNA upstream 308333 43350779 ~ 43362687 (+) True AMCG00004329
AMCG00004346 mRNA downstream 73242 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004351 mRNA downstream 688620 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004354 mRNA downstream 776449 44498428 ~ 44498907 (+) True AMCG00004354
AMCG00004353 mRNA downstream 789868 44511847 ~ 44512326 (+) True AMCG00004353
AMCG00004352 mRNA downstream 827453 44549432 ~ 44552133 (+) True AMCG00004352
TU9000 other upstream 979911 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1454658 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 2163789 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 6670862 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6779274 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2240031 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4424909 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5210471 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6429285 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7021812 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile