RNA id: AMCG00004344


Basic Information

Item Value
RNA id AMCG00004344
length 2270
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00004344
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43725672 ~ 43734731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTCTACACCTCTGTTGCGTTGGGAGGGTCACTATACTGGCAGCCTGAAGAGCTCTGAGGAAacaattcactttttaaatatcagaTATTTTTCCACTCCGTTTTCAGGGAATTACCACTCTGTCGTCTCCAATGAATCGTCACTTCACCCTGTTCAATAATAGTCCGTGAAGTAAAGCGGTCTCCAGCCATGAGCTGCTTGGATGTTATGTACCAAGTGTATGGTCCACAGCCGTATTTCGCTGCAGCCTACAGCCCCTATCACCATCAGAAACTAGCTTTTTACTCTAAAATGCAAGAAGCACCAGACAGTGGCAGCAGTTCCTTCTCCAGCCATTGTGGTCCAGCGATAAAGGAAGAGGACAAGGAGCGCCCACCCGAGGCCGAGTACCTCAGCTCCAGATGTGGGATCCGGGACAAGGAGCCCGAGGCCGAGTACCTCAGCTCCAGATGTGTGATCCGGGAGAAGGAGCGTCCGCCCGAGGCCGAGTACCTCAGCTCCAGATGTGTCCTCTTCACCTACTTCCAGGGGGACATCAGCTCCGTGGTGGACGAGCACTTCAGCCGCGCTCTCAGCCAGCCGAGCAGTTTCGTTCCCAGTCCTCCCAGTAATGGATCATTCCCAATGAGCCAGAGGAGTTTCCCTCCATCCTTTTGGAACAGCACCTATCAGCCTTCGGTCACGGCCTCTCTCAGTAGCAGCCTAAGCAGTGCCCTGGGTGGTCCACACACTGAAATTCCCTTTCCAACAGACCCTTACTCCACAGCCTCTATACACAGCCACTTGCACCAGGGTCCCCCCGAACCGTGGCACCACacccaccaccatcaccaccccTACTCCCTCAGTGGAGCCATCAGCACTCAGAGCTCGGCGTACCCCAGGCCCACCATGCACGATGTCTACGGCACACACTTCGACCCCCGCTACAGCTCTCTGTTAGTACCGTCAGTACGACCACACCGGCTTACTCCTGCCACCGTGCCCACGCCGGGAACCCCGCAATGTGACATTGGCAAGAGTGAACCCGCTTCCTCTGCCTGGACGGGGCCTTTCACAGGACCCGGCACAGACATGAGCCAGAGCTTGGGCCTGAATGTGGATGCAGGTCTGCAGCCCCAGGATAAAAGCAAGGACCTTTACTGGTTTTAAAGTGCTCCTGCATCTACCTCCCTTGGCTGCCCTGTTTATCTCTAcctttttgaaattaaaaggcATTTTCTGTAACAGATTCTGATCTCGGTTTCAGCTCGACGTTACTCCCTTTGTGGCGGAGCCCTCCTGAGCTGATTAGTTACCACAGCTAAACCCACAAGAAACGAGAAGGAATCTGATCAGAGGAACTGATCTTCAGCAGAGCAAAAACAGCAAGGAGACGATGGAAATGATGCCTTTCCCCATGAAGAACCGAGAAAGAGTGCCGTGGACAGATATTTGTGATCAGTTTAGGATGAGCACTTGAAATAATGAACTCTCTTGAGGAAGTGCGAAAGGACAGATTTTCACTAAAGAAGACTTGAGAACATTCTGCTGTAAATGTTAATTCATTCACTTCACATCCTGAAATGAGATTTGTAATCACCATGCAAGAAAATAGCAACTTTACAGTAATGAATAAGCaaaaaaagaagtaaaaatCATAAAGAATTAGCCGTTATTATGATCTGAATTGTGCAGTGGTTATTTGAGGCCACCTGATTTAAGACTGCTCCACTGCAGCTGTCGAGAACAACTGTTCGAACTCAACAGACTCACAATTAAGGTGGCACTTTACTGAGTTTGACCAAACAAGTGCTTCGGACTTCTTACAAGGAGCATTTTGTGAAATCTGGACCCTCCCCCAAATGAAAATAAGACAGCCTTCACAGGGAACAACTGGGCAAAGCAGCAGGAGCAAAGATCAGCAAAGAGCACATTGTGGACACATGATCCCTGTGACTAGGagctctttctgtgtgtgtgtgttgctgtcttTCTGCCATCTGAGTCGTTTTATAGGATTGAAATAAGAGACATTTGTAACTGTATAAAGAGCTACATTAAAGATCTTTATTACAAAGGTCTTCAGTCTTTGAGTCTTTGCTCGTCCGTAGGAAGTCAAGCTTTAGCTAAGGTTTTCGAAATAAGCACATTAATATATTCcctttaaagtatttattttgctaagaCATTCATGGTGTAAAtgttacatgttttcttttgtagcAATCTGTGGATAGGAAAGAACACcaccatttaaataaaagtgaaagtGCGGCTCGTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9175 lncRNA downstream 297086 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA downstream 297086 43419851 ~ 43428586 (-) False AMCG00004336
TU9118 lncRNA downstream 488062 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 987822 42725912 ~ 42737850 (-) True G7336
TU9007 lncRNA downstream 1005981 42692754 ~ 42719691 (-) True G7335
TU9289 lncRNA upstream 133732 43868463 ~ 43868706 (-) True G7554
TU9322 lncRNA upstream 348366 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 442915 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 601540 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 673629 44408360 ~ 44408665 (-) True G7587
AMCG00004340 mRNA downstream 54424 43635147 ~ 43671248 (-) True AMCG00004340
AMCG00004341 mRNA downstream 116937 43605869 ~ 43608735 (-) True AMCG00004341
AMCG00004339 mRNA downstream 121547 43593153 ~ 43604125 (-) True AMCG00004339
AMCG00004334 mRNA downstream 186262 43519979 ~ 43539410 (-) True AMCG00004334
AMCG00004337 mRNA downstream 211236 43485269 ~ 43514436 (-) True AMCG00004337
AMCG00004345 mRNA upstream 43418 43778149 ~ 43789688 (-) True AMCG00004345
AMCG00004347 mRNA upstream 264186 43998917 ~ 44002983 (-) True AMCG00004347
AMCG00004348 mRNA upstream 280388 44015119 ~ 44047238 (-) True AMCG00004348
AMCG00004350 mRNA upstream 352645 44087376 ~ 44091833 (-) True AMCG00004350
AMCG00004349 mRNA upstream 367352 44102083 ~ 44111125 (-) True AMCG00004349
TU8946 other downstream 1346266 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 3876549 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6356850 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8311226 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 8761833 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 786183 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2572195 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 2733394 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 3149904 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3325165 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile