RNA id: AMCG00004348


Basic Information

Item Value
RNA id AMCG00004348
length 522
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00004348
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44015119 ~ 44047238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCACTCTTCCTCAGGGTGTTCATCATCATGaGAAACCGCTACCTCAGGGAGCCCCCGGGGGTGTGATCGGGATCCTGGGCGGTGTGGTGGCAGCCGGGCTGATCATAGGTGTGGCCATCACTGTGTTCGTGGTGTACCGGCGCCAGCAGAAGACACGCACTGAGACCGACAACGACCTGACAGACTTGCCTCCTGCCCACAAACCAGCCCCTCCCCCACCCAAGAAGAAGACCACTGAGATGAAGAGTCACCTCACTGCAGACGATATTCAGGTGGTTCACCTGGACAAACCTGAGGAGGAAATGCAGAAGCTTCCCCTTCAGCCTCCATATTATGACATGGCGCCCTCTGAGTCTGCTCCCTACTCAGACAAGCTGAACGCTGGACACAAGGACTATGATGTCCAGTACGCGGAGCTGGACACCTCTGCTCTGGCATCTTCGCCCAGCCCACGAAGCTCCATTCACACTGGCGGGGACCTTGTCGAGTATGCAACCATCCAGCCTACCTTACGCTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9289 lncRNA downstream 146413 43868463 ~ 43868706 (-) True G7554
TU9175 lncRNA downstream 586533 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA downstream 586533 43419851 ~ 43428586 (-) False AMCG00004336
TU9118 lncRNA downstream 777509 43235818 ~ 43237610 (-) True G7419
TU9010 lncRNA downstream 1277269 42725912 ~ 42737850 (-) True G7336
TU9322 lncRNA upstream 35859 44083097 ~ 44089780 (-) True G7580
TU9325 lncRNA upstream 130408 44177646 ~ 44177988 (-) True G7583
TU9327 lncRNA upstream 289033 44336271 ~ 44336570 (-) True G7585
TU9329 lncRNA upstream 361122 44408360 ~ 44408665 (-) True G7587
TU9363 lncRNA upstream 472937 44520175 ~ 44520818 (-) True G7609
AMCG00004347 mRNA downstream 12136 43998917 ~ 44002983 (-) True AMCG00004347
AMCG00004345 mRNA downstream 225431 43778149 ~ 43789688 (-) True AMCG00004345
AMCG00004344 mRNA downstream 280388 43725672 ~ 43734731 (-) True AMCG00004344
AMCG00004340 mRNA downstream 343871 43635147 ~ 43671248 (-) True AMCG00004340
AMCG00004341 mRNA downstream 406384 43605869 ~ 43608735 (-) True AMCG00004341
AMCG00004350 mRNA upstream 40138 44087376 ~ 44091833 (-) True AMCG00004350
AMCG00004349 mRNA upstream 54845 44102083 ~ 44111125 (-) True AMCG00004349
AMCG00004357 mRNA upstream 440170 44487408 ~ 44495762 (-) True AMCG00004357
AMCG00004366 mRNA upstream 453636 44500874 ~ 44508818 (-) True AMCG00004366
AMCG00004356 mRNA upstream 477826 44525064 ~ 44527659 (-) True AMCG00004356
TU8946 other downstream 1635713 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4165996 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 6646297 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 8600673 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 9051280 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 473676 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 2259688 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 2420887 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2837397 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 3012658 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile