RNA id: AMCG00004355


Basic Information

Item Value
RNA id AMCG00004355
length 6612
RNA type mRNA
GC content 0.47
exon number 25
gene id AMCG00004355
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44618185 ~ 44640732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCGCCGGTGGCGGAACGCCGGGCCCAGGCGGTCCAATGAGATCGCGCCGCGTCCTGGGCCCTGCGCGGAGTGCGAGACCGGCCCGGGCGAGAGGAAAGACTCCAGAAATAGAGAGCGACTTGCTTCACAAGGGGTGACCATGGGGAGAAAGCTGTCTCTCTGGGCTCTGGCCTGCTTGATCGTGGCACTCCTGCCCTCTTGCACAGATTCTGTAGCGGTTATGTCCGTGGACCTTGGCAGTGAGTGGATGAAAGTCGCTATTGTTAAACCCGGAGTGCCGATGGAGATTGCATTGAACAAGGAGTCCAGGAGGAAAACACCGGTGGCCTCCGTGAAGACCCCTAGGCTTGTGTACCGCTACATCCAGGACCTGCTGGGCAAGTCAGTGGACAACCCCCAGGTGGCGCTATACCAGAAACGCTTCCCAGAGCACCAGCTGGAGAAGGATGAGAGCCGTGGCACTGTGCTCTTCAAATACAGCGAtgAGCTGCTGTACTCCCCTGAGGAGGTGCTGGGGATGGTGCTGAACTACTCTCGAACTCTGGCCCAGGACTTTGCAGAGCAGCCCATTAAGGACGCTGTGATCACCGTGCCAGCCTTTTTCAATCAGGCGGAGCGCAGGGCAGTCCTGCAGGCTGCACAGATGGCCGACCTGAAGGTCCTTCAGCTCATCAACGACAACACTGCTGTGGCCCTGAACTATGGTGTTTTTAGAAGGAAAGACATCAACAGCACTGCGCAGAACGTGATGTTCTATGACATGGGTTCGAGTAGCACTGTGGCCACCATCGTGACATATCAGACGACGAAGACCAAGGATTCTGGCACGCAGCCCCAGCTACAGATCCGGGGAGTGGGGTTTGACCGGACACTGGGTGGGTTCGAGATGGAGCTGCGCCTGCGGGACCACCTGGCCGGCCTGTTCAACCAGCAGAAGAAGACTGACAAGGACGTGCGGGAGAACGTGAGGGCCATGGCCAAGCTGCTGAAGGAGGCGCAGAGGCTGAAGACCGTGCTGAGTGCCAACGCAGACCACATGGCCCAGGTGGAGGGGCTCTTGGATGACATAGACTTCAAGTCTCGTGTGACTCGTGCGGAGTTTGAGGAGCTGTGTGCCGACCTGTTCGACCGGGTGCCGAGCCCAGTGCAGCAGGCGCTCAGTGCGGCCGAGATGTCCATGGATGAGATTGAGCAGGTAATCCTTGTTGGGGGGGGCACACGGGTCCCCAAAGTCCAGGAAGTCCTGCTGAAGGCTGTGGGCAAGGAGGAGCTAGGGAAGAACATCAATGCAGATGAGGCGGCGGCAATGGGGGCGGTGTACCAGGCAGCCGCTCTGAGCAAGGCCTTCAAGGTCAAGCCCTTCCTCGTCCGAGATGCCGCCATCTACCCCATACAGGTGGAGTTCACGCGTGAGATGGAGGAGGACAGCGGCAGCGTGAAGAGCCTGAAGCACAACAAGCGTGTGCTGTTCCAGCGCATGGCCCCCTACCCCCAGCGCAAGGTCATCACCTTCAACCGCTACAGcgatgacttcctgttctacGTCAACTATGGAGACGTCAGCTTCCTTGGTGCTGAAGGCCTAAGGGCGTTCGGCTCCCTGAACTTGACCACTGTGAAGCTAACTGGGGTGGGCAGCAGTTTCAGGAAGCATGAGGAGGCAGAGTCCAAGGGCATCAAGGCACACTTCAACATGGACGAGAGCGGTGTGCTCTCGCTGGACCGGGTGGAGTCGGTGTTTGAGACTGTAGTGGAAGAAAAAGAGGAGGAGTCCACCCTGACAAAACTTGGAAACACCATTTCCAGCCTGTTCGGAGGAGGGAGCTCGGAGCCTAAAGCCAATGTCTCTGAGCCTGTTCAGGTCCCAAAGGAGGACAAGGCTGCCCCTGGAGAGGAGAAGCAGGAGACTGGGGAGCAAGCTGAAACCGAGCCCCAGGCTGAGGAGGAGAAGCCAGAGAtggagaaggagggggagaagCCGGAGGAGAAGCTGGAGTCACAGGATAAAAACGGAGAGAGTGCAGGAAAGGAGGGGGAAGAGAAGAAGCCAATGGAGGAAGGAGGGAagccggaggaggaggaggaggggaagaaggCCAAGCCCCAGAAGAAGTCCAAGATTTCAGAGGAGATTGGGGTGGAGCTGCAGGTGAATGACGTCTCCAACCCCAGCGTGGAGCAGATCGAGCTGCAGGATCTGACAGACCGGGATCTGGagaagcaggagagagagaagacccTCAACAGCCTGGAGGCCTTTATCTTTGAGACGCAGGACAAGCTGTACCAGGAGGAGTACCAGGTGGTGGTGgcggaggaggagagggagcagaTCACTGCCAAGCTGTCCGATGCATCCAGCTGGATGGACGAGGAGGGCTACTCGGCGGGTACCAAGCAGCTGAAGGATAAGCTGGCGGAGCTGCGGAAGCTGTGCAGGGCCATGTTCTTCCGGGTGGAGGAGCGCAGGAAGTGGCCTGACCGCCTTGCTGCCCTGGACAGCATGCTCAACCACTCCAGCTTATTCCTCAAGGGTGCCAGACTCATTCCTGAGGATGACCAGATCTTCACAGAGGTGGAGCTGAATACACTGGAGAAGGTCATCAATGAGACCATGacGTGGAAGAACGAGACGGTGGCAGAGCAGGAGAAACGCGCAGCCACGGAGCGACCTGTGCTGCTGTCCAAGGACATCGAGGCCCGGCTGGGTCTGCTGGATCGCGAggtgaagtacctgctcaacAAGGCAAAGTTCGCCAAGCCCAAACCCAAGCCCAAGGACAAGAACGCGACCAGCTCTGACGCAGACAAGAAGACCGCCAACGACACTGAGAAGCCACCAAAGCCCCAGATGAGAACCAACGGAAAGCAGTAAACTGGAAaaccacatagaagatgaaTTATAACATCTGGAATTCCTGAAAtaattcagtgtatttattgacttttgtaatttttttgttttgttttctcctatTAAATTAAACCGGAATGTGTCAGTGGATTAGCTTGGAAAAAACCTATAGGTGTATATTTCATGTTAagggtatttttgttttggattttattaattattctcCACTCAGATGgccccaaaacattttttaaattcatatctctcatttttcccccctgaagttttaaaatctaaacaaatcCCATGTTTTTGGTCATGTAGAGTGGCCTTACAGCAGCCCAGGTGCATTGTGGGGGGACTGTGCTTTCTATGTTCTGAACACAGTTCTTCGGAGAGCAGAGGAGTAACACGGACTGTGTTCTTATCCCTAATAATTTCAGACATTTGTTAAAAGCATTTGCCCACTAAAGCAAGTGGCAGTGTGGTTCTATACTGAGGAaaggtcattttcattttaggaaGGTGACGGGGGCAGAATACTTAGTTTTTAAgctttgtgtgcattttgtttactttttctctaATGGGCACAGACCTGCACAGTGACCGGCTTCTCTCTGTAGGACACAGTGGGCAGTTTACACCCCAGAGTCACGGCAGaagtttttttctgtgtgatGGAAACCTTGCTTTGCTTGTGGTGGTATGACTTTGACCCTCGGATTtatgcggggggggggggggggggggggggggtaggttGGCAGGTTGGCAACAGCTTCTTAATTGCACCTGAATGCCCTGACTGGGGACACTCCAGTGCTATTCTGAAAGCAGGATTGTTCCCAGTGTTGACTCAGGACCTGCTGTGGTGCTCCATGGAGTACAGGCTGGCTGCAGTGGCTGCCACTgatttcttgtgtgtttgtcagcAGGGAGGAGAGCTGTACAGAGGTCACGCCGAACATTGCTTGcgttttgtctttgtctttctcaTTCAGTAGCGGGCGAGGTGTTATGTGGGCTTATTGGgagtttggtttgttttctggaaAGTCAGGATTTTCACAGCCCAACTTCTTGCCATTCTATAAATATCGGAAGTAACAACTTGAATCCTACATCAATGTTGCACTTCAATTACACCTTTCTGAAActtctatattttgttttacctgtCTTATAATGTTTTGATGAAGCGACTGTGCAGTCtatattaattgtatcatgATGATCCCAGACTGTCAGGCTGTGTATGGTTGTCCGTGTTCAGATTTCCCAAGGGGAATATTACAGTAACTCGGGCATTATGGGGCATGTTTCACAGTAGCCTACCAGGTGACAGCCTGCTTATTCCAGTTTCACAACACTGAGCAAGATGTAACGGGAGAACCGtagtaaaaatattttgtatttcagccACTTCAATATCTAAGCTGatttctacaaaaataaaaataaacaccccATTCTGCTGTGAAATACTGTTTTGCTATAAAGAGTAAAAGAAAAGATGtataaaaaaggttaaaattaaaagtgcatCTGTGAACTAGCACACTGTATGATATTGGCTTTGTGCAAAGGGATGCAAAAGTATCACGAAGTAACCAATGTTGGAGAACATTTGAACATTGCCTGCCAGGGCAGCCATTAaaacagtgtgtgtctgtactgcttTTACAACACACATAGATAGTGTGGGATTATAGaaaggtggggggggagagaagGGATATTTCTGTTGTGCAACCAGGCCTGTCCTTGGGCGTTTTTAATATGCTGCTTGACTGAATTTATTTACCCAAATTACCTaaggaatactttttttttttttttttcatcactccaagtgtttttctttaatggGGATATGGTAGATTACTGGACATATCcaaatttgttttttgcacAAGAAAGGTTAGTTTCAGTGGTGCAGCCAGAGGACAGATGCTGAAGTGTCAAACCCCAATGTTTGTTCTAGTTTCTTGTCTGGTGTTTCCTACTGGGTGATGTAACCTTTTAAGAAAACTGTAGAGCACCTACTGTTGATGAGCCAAAAAGGGCAGAAACTGCTAAAATGGTGTGGGAATCAGGTGTAAGGCAAAGGTCTCCTCACTGATTTGGCTTCCAGCGTTCCTTATGGTGGTTGCATCCCACTTCCCTCACATGAACAGTTGTGCACAAGTGCAATTTTTCAGGTGGCTTAGTGTAGTGGTTTATAACTCAATTACATAGTTTTTTCTGGTAACACCTACATTGAagtacaatactgtatttttaattctcatGCAGTTTTGCCTGGTCCGTGGGTTTTTGCCTTTCTATGAAAACTCGAACAACGTTTTTTCAAGAGATGGATTTTGCACTGGACGTCCGAGGACaggattgattttgtttgtttgttttttttcccctgtgcaGTTCCAAATGAAACCATTTAACCAAATCAAATAAAGACTATGGTTTCCTGTATTTTGGAGAAAGcaaaagattttgtttttgctgcaggTTTCATGGCTAAGTTAAAATGTTAGTGTGATTGCTAATGGAAACACTTTTCCTGtatataatttttcaaatttatgttttttgttaatctaaaccttaaacaaaaacaccaaaccTTGTAATGGCTTCAGTATTCCACCAGGGTGCAGCAGAGACATTTGGTTGTCCTCAGTATATTACAGCAAAATGTGTTCAAACTTCTCAATTTTCCACATAAAATGCAGACACAACTGGTGCACTTCGAGAGAAACTAATTATACAGAGCTCATTCTAGCTTTCATCTGCACCTGACATGTTTCTGATCTTATGGTATTTATGTAACAAGGGGTGATTATTAGCAATATTATATAACTTGATTTTGAGTTGCattaaagggatacttcagtttttggcattttagccagaTGTCTTACTCGTCAAGAGTCCTATGAATCCATGGAAAACTTTTACATTCTGTGGCTCCAGTTTGAAAGAATttgaatttttttgttttattagcttAGCCCAATACAGCGAACCTGATACATGCCTTACTTCCTTATCTTGGTAGACAACTTCTGCCCTGACTGCATTAAGTTATAGTgcttcaaaagaaaaagcatttctaAATCTGTGACTAATGCTAAGAAAAATTTACAATAATCATGATAAGTGATAATCAGACAAAGTACTTAGTTTTTATCGAACTGAATCATTATATTAAAcagctgtttattttgaatagaattaaaacatttcaattaaagattGCTTAAAGAATACCagttgtgaaaacaaaaatcactatCACATTATATTGTAACTCTTGCTTTCTTTTGTAAATAACCGTTgacttgtttagtttttattttagcttgtCTGCAACTTGCCTTGGATGTGGATGATTATAACTAGTTTGGATCTTTATCATGTTCAATATGATAACGTTTCTCATtattgaataaacacatttgttaacCATCATTTCAAGGGATATTTGGCAAGATGATCAGGATCATGGCGGTACgatgcacaaacaaacaaatcaatgatTAAGAGAACAGTGCCGATCCTGAGCAGAATGCATACATGGGCGGGCCCATTCGGATTTACACTGAATGCTTCACAAAATGTAAGCAATACTGAtgataatcattaaaataataataattattatttatattttagcagacgcccttatccagggcaacaaattagtttaatagatacttttttattgaattgagaTTGGAACctgac

Function

GO:

id name namespace
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09486 HYOU1; hypoxia up-regulated 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9429 lncRNA upstream 786 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 30201 44587706 ~ 44587984 (+) True G7644
TU9402 lncRNA upstream 43188 44574331 ~ 44574997 (+) True G7638
TU9368 lncRNA upstream 75042 44530340 ~ 44543143 (+) True G7614
TU9326 lncRNA upstream 281504 44336451 ~ 44336681 (+) True G7584
TU9558 lncRNA downstream 1278886 45919390 ~ 45921805 (+) True G7765
TU9695 lncRNA downstream 1749884 46390388 ~ 46390751 (+) True G7879
TU9725 lncRNA downstream 2075274 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 2081325 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 2351713 46992217 ~ 46997805 (+) True G7949
AMCG00004352 mRNA upstream 66052 44549432 ~ 44552133 (+) True AMCG00004352
AMCG00004353 mRNA upstream 105859 44511847 ~ 44512326 (+) True AMCG00004353
AMCG00004354 mRNA upstream 119278 44498428 ~ 44498907 (+) True AMCG00004354
AMCG00004351 mRNA upstream 207134 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004346 mRNA upstream 819710 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004367 mRNA downstream 67509 44708013 ~ 44711574 (+) True AMCG00004367
AMCG00004368 mRNA downstream 73521 44714025 ~ 44732599 (+) True AMCG00004368
AMCG00004374 mRNA downstream 428411 45068915 ~ 45096943 (+) True AMCG00004374
AMCG00004375 mRNA downstream 485420 45125924 ~ 45143449 (+) True AMCG00004375
AMCG00004378 mRNA downstream 662061 45302565 ~ 45307246 (+) True AMCG00004378
TU9000 other upstream 1927076 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 2401823 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 3110954 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 7618027 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 7726439 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 1321506 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 3506384 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 4291946 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 5510760 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 6103287 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile