RNA id: TU9437


Basic Information

Item Value
RNA id TU9437
length 4190
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00004355
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44618185 ~ 44640732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCACCAAAGCCCCAGATGAGGTGAAACCTGCAGAAGAGCCACCCACTGAAGATGCTGGGACAGACAGCAAGACCGACAGCCAGTCGGAGCCTTCAGATCCTTTGGAGATAGAAGCAACAGCAGGCAAGTCTCCAGCTCCTCTGTGCAGAGGAATTCAGACTTCAGAGGATTTTTACTTCCTGTTCTCTGAAGGGGACGTGGCTGTTTAGAACCAACGGAAAGCAGTAAACTGGAAaaccacatagaagatgaaTTATAACATCTGGAATTCCTGAAAtaattcagtgtatttattgacttttgtaatttttttgttttgttttctcctatTAAATTAAACCGGAATGTGTCAGTGGATTAGCTTGGAAAAAACCTATAGGTGTATATTTCATGTTAagggtatttttgttttggattttattaattattctcCACTCAGATGgccccaaaacattttttaaattcatatctctcatttttcccccctgaagttttaaaatctaaacaaatcCCATGTTTTTGGTCATGTAGAGTGGCCTTACAGCAGCCCAGGTGCATTGTGGGGGGACTGTGCTTTCTATGTTCTGAACACAGTTCTTCGGAGAGCAGAGGAGTAACACGGACTGTGTTCTTATCCCTAATAATTTCAGACATTTGTTAAAAGCATTTGCCCACTAAAGCAAGTGGCAGTGTGGTTCTATACTGAGGAaaggtcattttcattttaggaaGGTGACGGGGGCAGAATACTTAGTTTTTAAgctttgtgtgcattttgtttactttttctctaATGGGCACAGACCTGCACAGTGACCGGCTTCTCTCTGTAGGACACAGTGGGCAGTTTACACCCCAGAGTCACGGCAGaagtttttttctgtgtgatGGAAACCTTGCTTTGCTTGTGGTGGTATGACTTTGACCCTCGGATTtatgcggggggggggggggggggggggggggtaggttGGCAGGTTGGCAACAGCTTCTTAATTGCACCTGAATGCCCTGACTGGGGACACTCCAGTGCTATTCTGAAAGCAGGATTGTTCCCAGTGTTGACTCAGGACCTGCTGTGGTGCTCCATGGAGTACAGGCTGGCTGCAGTGGCTGCCACTgatttcttgtgtgtttgtcagcAGGGAGGAGAGCTGTACAGAGGTCACGCCGAACATTGCTTGcgttttgtctttgtctttctcaTTCAGTAGCGGGCGAGGTGTTATGTGGGCTTATTGGgagtttggtttgttttctggaaAGTCAGGATTTTCACAGCCCAACTTCTTGCCATTCTATAAATATCGGAAGTAACAACTTGAATCCTACATCAATGTTGCACTTCAATTACACCTTTCTGAAActtctatattttgttttacctgtCTTATAATGTTTTGATGAAGCGACTGTGCAGTCtatattaattgtatcatgATGATCCCAGACTGTCAGGCTGTGTATGGTTGTCCGTGTTCAGATTTCCCAAGGGGAATATTACAGTAACTCGGGCATTATGGGGCATGTTTCACAGTAGCCTACCAGGTGACAGCCTGCTTATTCCAGTTTCACAACACTGAGCAAGATGTAACGGGAGAACCGtagtaaaaatattttgtatttcagccACTTCAATATCTAAGCTGatttctacaaaaataaaaataaacaccccATTCTGCTGTGAAATACTGTTTTGCTATAAAGAGTAAAAGAAAAGATGtataaaaaaggttaaaattaaaagtgcatCTGTGAACTAGCACACTGTATGATATTGGCTTTGTGCAAAGGGATGCAAAAGTATCACGAAGTAACCAATGTTGGAGAACATTTGAACATTGCCTGCCAGGGCAGCCATTAaaacagtgtgtgtctgtactgcttTTACAACACACATAGATAGTGTGGGATTATAGaaaggtggggggggagagaagGGATATTTCTGTTGTGCAACCAGGCCTGTCCTTGGGCGTTTTTAATATGCTGCTTGACTGAATTTATTTACCCAAATTACCTaaggaatactttttttttttttttttcatcactccaagtgtttttctttaatggGGATATGGTAGATTACTGGACATATCcaaatttgttttttgcacAAGAAAGGTTAGTTTCAGTGGTGCAGCCAGAGGACAGATGCTGAAGTGTCAAACCCCAATGTTTGTTCTAGTTTCTTGTCTGGTGTTTCCTACTGGGTGATGTAACCTTTTAAGAAAACTGTAGAGCACCTACTGTTGATGAGCCAAAAAGGGCAGAAACTGCTAAAATGGTGTGGGAATCAGGTGTAAGGCAAAGGTCTCCTCACTGATTTGGCTTCCAGCGTTCCTTATGGTGGTTGCATCCCACTTCCCTCACATGAACAGTTGTGCACAAGTGCAATTTTTCAGGTGGCTTAGTGTAGTGGTTTATAACTCAATTACATAGTTTTTTCTGGTAACACCTACATTGAagtacaatactgtatttttaattctcatGCAGTTTTGCCTGGTCCGTGGGTTTTTGCCTTTCTATGAAAACTCGAACAACGTTTTTTCAAGAGATGGATTTTGCACTGGACGTCCGAGGACaggattgattttgtttgtttgttttttttcccctgtgcaGTTCCAAATGAAACCATTTAACCAAATCAAATAAAGACTATGGTTTCCTGTATTTTGGAGAAAGcaaaagattttgtttttgctgcaggTTTCATGGCTAAGTTAAAATGTTAGTGTGATTGCTAATGGAAACACTTTTCCTGtatataatttttcaaatttatgttttttgttaatctaaaccttaaacaaaaacaccaaaccTTGTAATGGCTTCAGTATTCCACCAGGGTGCAGCAGAGACATTTGGTTGTCCTCAGTATATTACAGCAAAATGTGTTCAAACTTCTCAATTTTCCACATAAAATGCAGACACAACTGGTGCACTTCGAGAGAAACTAATTATACAGAGCTCATTCTAGCTTTCATCTGCACCTGACATGTTTCTGATCTTATGGTATTTATGTAACAAGGGGTGATTATTAGCAATATTATATAACTTGATTTTGAGTTGCattaaagggatacttcagtttttggcattttagccagaTGTCTTACTCGTCAAGAGTCCTATGAATCCATGGAAAACTTTTACATTCTGTGGCTCCAGTTTGAAAGAATttgaatttttttgttttattagcttAGCCCAATACAGCGAACCTGATACATGCCTTACTTCCTTATCTTGGTAGACAACTTCTGCCCTGACTGCATTAAGTTATAGTgcttcaaaagaaaaagcatttctaAATCTGTGACTAATGCTAAGAAAAATTTACAATAATCATGATAAGTGATAATCAGACAAAGTACTTAGTTTTTATCGAACTGAATCATTATATTAAAcagctgtttattttgaatagaattaaaacatttcaattaaagattGCTTAAAGAATACCagttgtgaaaacaaaaatcactatCACATTATATTGTAACTCTTGCTTTCTTTTGTAAATAACCGTTgacttgtttagtttttattttagcttgtCTGCAACTTGCCTTGGATGTGGATGATTATAACTAGTTTGGATCTTTATCATGTTCAATATGATAACGTTTCTCATtattgaataaacacatttgttaacCATCATTTCAAGGGATATTTGGCAAGATGATCAGGATCATGGCGGTACgatgcacaaacaaacaaatcaatgatTAAGAGAACAGTGCCGATCCTGAGCAGAATGCATACATGGGCGGGCCCATTCGGATTTACACTGAATGCTTCACAAAATGTAAGCAATACTGAtgataatcattaaaataataataattattatttatattttagcagacgcccttatccagggcaacaaattagtttaatagatacttttttattgaattgagaTTGGAACctgacaaaaacataattaatagtTTAAACCTAGCCATGGaatgcataataaaaatgatgatagacatatatatatatataatatttttaaatcaaagaaacTTGAATTTCTAGATATGAGCAGTTGATTGCAATATTTGACATGGTAAATTGCtttttcacataaataaatatgagttTGAGCACGTCTCAAGTTTTACTTCCATAATTACACATAGAAATGTCTAGGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9429 lncRNA upstream 18906 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 48321 44587706 ~ 44587984 (+) True G7644
TU9402 lncRNA upstream 61308 44574331 ~ 44574997 (+) True G7638
TU9368 lncRNA upstream 93162 44530340 ~ 44543143 (+) True G7614
TU9326 lncRNA upstream 299624 44336451 ~ 44336681 (+) True G7584
TU9558 lncRNA downstream 1278658 45919390 ~ 45921805 (+) True G7765
TU9695 lncRNA downstream 1749656 46390388 ~ 46390751 (+) True G7879
TU9725 lncRNA downstream 2075046 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 2081097 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 2351485 46992217 ~ 46997805 (+) True G7949
AMCG00004352 mRNA upstream 84172 44549432 ~ 44552133 (+) True AMCG00004352
AMCG00004353 mRNA upstream 123979 44511847 ~ 44512326 (+) True AMCG00004353
AMCG00004354 mRNA upstream 137398 44498428 ~ 44498907 (+) True AMCG00004354
AMCG00004351 mRNA upstream 225254 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004346 mRNA upstream 837830 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004367 mRNA downstream 67281 44708013 ~ 44711574 (+) True AMCG00004367
AMCG00004368 mRNA downstream 73293 44714025 ~ 44732599 (+) True AMCG00004368
AMCG00004374 mRNA downstream 428183 45068915 ~ 45096943 (+) True AMCG00004374
AMCG00004375 mRNA downstream 485192 45125924 ~ 45143449 (+) True AMCG00004375
AMCG00004378 mRNA downstream 661833 45302565 ~ 45307246 (+) True AMCG00004378
TU9000 other upstream 1945196 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 2419943 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 3129074 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 7636147 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 7744559 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 1321278 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 3506156 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 4291718 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 5510532 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 6103059 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile