RNA id: AMCG00004357


Basic Information

Item Value
RNA id AMCG00004357
length 2902
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00004357
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44487408 ~ 44495762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAATTTCAAGTGGGGTATGTGTGCCTCGTCAGCCGTTATTTTCCGGTTCGACTTTTTCTCGCTCTGTCTTAGCCCACTGGCTTTCCGTCGCTTGGCCAGTTGTTTTCAGGGAACAGTAATGGCAGCCTCCAGCAACTTGGGCGCAGCGGGCACTCTGTCGAAAGCCGAGTATCTCAAGCGGTATTTGTCCGGAGACGGAGATGCAAACAAAACCAAGGACAAAAAGATCAAGAAGAAAAAAGCGAAGCCTCTCGGAAAGGGGATGAGGATAGTGGACGACGATGTGGATTGGAAGCAGCTGATCCAgacagaggagaaggagaaccatgaggaggaggaggaggaagaggaggcgcCAGTGGTGGCGGAGGTGATCGACGAGCGGCCGGAGGAGGTGAGGAGTTTGGAGCAGTTCAGGACCAGCAACAAGTGGAGGCTGATGGGAGGTAAGAACGAAGACTCTCAAGACTCGGATCATTTGCAGGTCTCTCACTCATCGGCAAGCTCAGGAACTGAATCTCTGAGGAAGACTGAAGGAAGGTCCTCGAGAGTCCGGCACGATTCTCCCGATCTCTCCTCTGCGAAACAAGAACGCCATGACTCCCCTGATCTCTCGCCTCAGAGGAAGAGCCGCCATGACTCCCCTGATCTCTCGCCTCGGAGGCAGAGGGAAGACGGCAGGATAGTGCATCACGACTCGTCATCGCCCTCACCCCCACGCAGGACTCGTGGTGGCAGCTCTCCCTCTGCTCAGAAAACACGAGGCAAAGATTCATTGCCCAGAAGGAAAGGGAAAGCTGCTTCAGCTTCTCAGCAGCACAGCGGACCTGACTCCCACCTGTCCCCACCCCGGCGACGCCAGCAGGCTGGCTCCGACTCCGACCTCTCCCCACCGAGACGGAAAGCCCGGCGCTCTCCGGACTCCGACCAGTCCCCCCGGCGACGCCCTAAGGCTGGCTCTGACTCTGACCTTTCCCCCACCCGGCGACGCCCCCAGGCTGGCTCTGACTCTGACCTGTCCCCCCCCCGGAAGGCCAGGCGCCCATCTTCTCCCAGTGCACAGGGGGCTGTGAGGATGCTGTCAGGGGCGGCGGCAGGACTGGTGTCTGTGGAGCTACTGAGGAAGGAGCGTGAGGAGAGCCGCCGGCACGAGAGGGACAGCCAACACCTGGAGGAGGCGTCAAGGAACGCAGATACGATTTTCCGAGACAAATCCGGGAAAAGGCGGGACATCGACCAGGAACGGGAAGAGCAGCGCAGGAAAGCTGGGGAGAAGGCAGAGAAAGACGAGAAATACGCACAGTGGGGGAAAGGGCTGGTCCAAGGTGAGATGCAGCAGCGCAATGTGGAGGCGGCGCTGCGGGAGGCCCAGAAGCCCCTGGCACGACACATCGATGATGTTGACCTGGACCAGATGCTGCgggagcaggagagggagggCGACCCTATGGCCGGCCTGCTGCGCCGCAAGAAGGAGAAGGACTCACAGCGCCAGGGGGTGCCAGAGAAGCCGCGGTACAAGGGCCCGGCACCGCCCCCCAACCGCTTCAACATAGCCCCTGGGTACCGCTGGGACGGGGTGGACAGGTCGAACGGGTTTGAGAGGCAGCGCTACAGCAGGTTGGCGGACAAGAAGGCTGTGCAGGAGATGGCCTACAAGTGGAGTGTGGAGGACATGTGAGGAGTCGGCCTTGCTGAGGCCACCCCTACCATGCAGGCTGCATTCCTGCCGCTCTCTCCACAGGATGCGGCCGGCTGCTCCCGCTGCTCCGGGGCTCGAAGGCAGTGCGGTCTGTGCTGGGTCACGGGTCATTGAGGGGACATACGCACAGACACATGCGCACTTCAGAGTCTGGCCACTACTGCTGTCTGTGCCTGGCACAGTGAGGCACGCTGCAATCATCGGGACTTCCCCAAGAAGGAACGGTTTGGgagttgctttttttttttttttttggtgttcgTTTCAGTTTCGACAGACCTCTTGAGACAGTGGCGACTTTACACAGATCCCTTCAGTACAAATGGCATTTTTTTGGTGGTCATTTTCAACAATTAAACCTGTAGTTTttgtatagtattttttttttttccctcttccttTCAAAGTGTTTGGCTGTTTTGAAATCAAATGTGGAGTTGCCTTTTTGTAAGCTTCCATGATGAAAACTATACCGCAGCAGGGACTTCCAATCAAGCGTCCCATGAGTCATCTAATACGCTGCCTGAGCTGACCACAGTCAGAGCTGGAAAGACTTAAGATTCGGATGCAGATCTTTGTACAGAACAACTGGATTCCTTTTTGATTAATTGTGCTCATTTGTGAATAAACAGTCAAATAAGAACTCACCCTTTATATTGAAATGACTTTTAGTCTGTTTGTACAGCTGTTTCTATGCTGAGCTCTTTTGAGCCCTTGGTTTCCCACTATGGCGACTACATTTGATATCTGTGGACCTGTTGGATTTAATGACCATTTTCTATTTGTGGTACAAGTACATGATGTGCCTGTGGCAGTGTAAGCCCCAGCAAAATCATATTGACAGAACTCGCTGTGAATGAAAACGATGCCGAGTTTGCTGTTGAAGTCGGATGCCTGCGTCGATCCTGTGGTTAATGTTAATGTTCTCCAGCAGTTTGTTGTCAATTCTGTTTTAATCAAAGCTTATGAAACTGTATGAAATCATATaaacaatattgaaatgaaatccAAAATAAAAGATTGATTGCAATTgtaccaaaacacaaaacacattgcaAACTGTATACATACTTAAATTTGAAGAGTTCCATACAGAGGAAAATACATAGTTCAATGACAAATTTCTGTGTCGCAATCTTTTTTTAGATTCAGGATGgcgttttttcagttttaaagggGGAAATAAATTTAATCTTAA

Function

GO: NA

KEGG:

id description
K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9329 lncRNA downstream 78743 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 150838 44336271 ~ 44336570 (-) True G7585
TU9325 lncRNA downstream 309420 44177646 ~ 44177988 (-) True G7583
TU9322 lncRNA downstream 397628 44083097 ~ 44089780 (-) True G7580
TU9289 lncRNA downstream 618702 43868463 ~ 43868706 (-) True G7554
TU9363 lncRNA upstream 24413 44520175 ~ 44520818 (-) True G7609
TU9388 lncRNA upstream 53620 44549382 ~ 44550322 (-) False AMCG00004364
TU9451 lncRNA upstream 127428 44623190 ~ 44712051 (-) True AMCG00004372
TU9453 lncRNA upstream 127428 44623190 ~ 44712051 (-) False AMCG00004372
TU9460 lncRNA upstream 136990 44632752 ~ 44633282 (-) True G7684
AMCG00004349 mRNA downstream 376283 44102083 ~ 44111125 (-) True AMCG00004349
AMCG00004350 mRNA downstream 395575 44087376 ~ 44091833 (-) True AMCG00004350
AMCG00004348 mRNA downstream 440170 44015119 ~ 44047238 (-) True AMCG00004348
AMCG00004347 mRNA downstream 484425 43998917 ~ 44002983 (-) True AMCG00004347
AMCG00004345 mRNA downstream 697720 43778149 ~ 43789688 (-) True AMCG00004345
AMCG00004366 mRNA upstream 5112 44500874 ~ 44508818 (-) True AMCG00004366
AMCG00004356 mRNA upstream 29302 44525064 ~ 44527659 (-) True AMCG00004356
AMCG00004361 mRNA upstream 38802 44534564 ~ 44538108 (-) True AMCG00004361
AMCG00004364 mRNA upstream 44401 44540163 ~ 44561575 (-) True AMCG00004364
AMCG00004365 mRNA upstream 65906 44561668 ~ 44568560 (-) True AMCG00004365
TU8946 other downstream 2108002 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4638285 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7118586 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9072962 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 9523569 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 25152 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 1811164 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1972363 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2388873 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2564134 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile