RNA id: AMCG00004359


Basic Information

Item Value
RNA id AMCG00004359
length 2923
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00004359
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44657242 ~ 44668196 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTCATCGCAGAAGAAGCAGTCCGAGGTGGCGAGGCCGTCTTCAAGGAGATAAACGCCGATGACGACGACCAGCAGCCGACGGAAATGGAGAGCCTGTGTATGAGCTGctatcaaaatgtatgtatcGTGGTGCAGTTCAGCAGTGGTTGCCCGGAGATCATCATCAGCTCCTTCGCCTGCCCGCACTGCAACTTCAACAACACAGAGATCCAGTCGGCCGGACGCATTCAGGACCAGGGCGTGTGCTACACCCTCAGCGTCCGCTCCAAAGAGGATATGAACCGTGAGGTGGTGAAGGCAGACAGCGCCACGGGCCTGATTGACCGGGCGGTGGCTGGGCTGGAGCAGGACCAGCCGCTAAGGAAGGCCACTGCTCCTGAGGTGTCTTTGAAGATCGACGAGTTCATTGAGAAGCTGAAGAATCTGAAAGATGTggagatcccttttaccctgGTTATTGATGACCCCTCGGGGAACAGCTTTGTGGAGAACCCCCTTGTCCCCCAGAAGGATGAGGCCCTGACAGTGACCAACTACTGGAGGACACGGCAGCAGGATGCACAGCTGGGAATACAGGCTCAGGAAGAGGATGCAGAGGTGGAGGAGAAGCCTTCCAGCGACATTGAAAGCATGAGGAATGAGGTGTTGAAGTTCAACACCAATTGCCCAGAATGCAACGCCCCTGCTTCTACCAACATGAAGTTAGTTCAAATCCCACACTTCAAGGAGGTGATCATCATGGCCACCAACTGTGACACCTGTGGACACCGGACCAATGAGGTGAAATCTGGGGGAGCCACGGAGGACCTGGGAACCAAAATAACTCTGCACCTCACGGACCCCTCTGATATGTCCCGAGACCTGCTCAAGTCGGAGACCTGCAGCATCATTATTCCAGAGCTGGAGTTTGAGCTGGGCATGGCAGTGCTGGGGGGCAAGTTCACCACGCTGGAGGGGCTTCTCAAAGACATCAAAGAGCTGATTGTAGAAAAAAACCCTTTTACCTGTGGCGATAGCTCTACTCCAGACAGGAAGATGAAACTGCAGCAGTTTGGCCAAAAGATAGAAAAGATCATGGCTGGAGAGATGGATGCTCACATCATTCTAGATGACCCAGCAGGGAACAGCTATCTGCAGAATGTGTACGCCCCGGACCCCGACCCCGAGATGAAGGTGGAACGGTATGAGCGCAGCTATGAGCAGAATGACGATCTGGGCCTGAATGACATGAGAACGGAGGGGTACCAGGAGCAGAGTGCGGAGCGATAGCACAAGGAGGAGAAAAccagcaagagagagagtgaggttAGGGAGGGAGAGGTACACAGATGCATAGTTAAATAATTGACTTGCTGGTCGTGGTGGATGGATGTGTCACAGCTAGGCAGTGTGGGTCTTCTCTGCTGGATGCTCTGGTCTTTGAGCATTCAGGACTATAGCTCGGATGGGTTGTGATGACCTCTACAGCACTTCCAAGTTGTAGGATTGGGAATCGAAAAGCCTATGTTTCCTGGCCTGAAACCAGGTGTTTTGCAGACAGAGGTTtgcacatttatgtatgtattgatgaaCAAGCTTTATAACATCTACATTGAACATACTCCAAGTTTGTGAtgtttagtttatatataaacacacatgtgtatatctatatatctatctatctatatgtgtatatatatatataatgtcattaTGGCACTTCAGCATTGGTCTGTTTGTCCTTcagaaattaatctgaaaattaagttattaaacCATACAGGGTAGTAtaatatatggatatataaTCTGGATGGAGAATAAATTGCAGCTCTATGTATTATGAATTGTCCTGATAATTCAGACTGCATTTAGAAGAATAAAGGATTCTACAAGATGTAGTTTTTCTGTAGCAAATACCAATTTGTTTGAGAGAACTGCACCAATCCTCCAGCCagaccatttgtttttgttctttgccACCACACAgttgatacaaataaataatatatgccAAATTAAGTTGGatatatctgtattttgtttttggttaaaaTGGAATTTAGAAACGTGAGTGACATATTTAATGTGTGTAGAGAATTGACAGATTGACTTTTCTATTGTGTTAAGTTCACTAAAAAGAGGCAAGAGCTCTGGTGTTCACGTGCATGTTAACACGCATAGATTGTGTCCAGAGAGAGTGTCCTCATACAGATGAGGAGGGGAGAAGCACGCTGAGCTAAGAATCCTTCTGATGTTTGTCACAGGGACACAAGGGCAGGATGCCAGATTTTTCTGAACCATTGTGTGTTTCCcaattgaggggaaaaaaatgttttgtgccttaattgaaatgtataactAATAATCCAGATTCCTTTTGgggattattttttgttaacaaAAATCAGAAGGTGTCTGAAGAAAGTGTTTGAACTTGGGTATTAAATGAAATTGAGTTTGGTGGAATAgcctttgatttatttctggGAAATAAAGACTACTTGCCATCGCAACCTAAAATGGTTATTTGCAATCTGTTTTACTAGCAGCAACTACCCACTGTATGTGTCACCgatatttacaaattaaatgtaaacaaaccgaGTACAGTAGACTggaaaacttaattttaaaccataCAAATACTTATGTTGGAGTGGGTATTTATTAGTGCTTGGGCAACTTAAATCTTTATTGATCTGAATGTTGATGGTTATCCTTTTATCTTAATCCATGGGAATAAAGGACACTGTCCAGTAGAGGTGTGGAGTGCTTATACTACAGCCTTGTTACTATGAAAATGTGTAAGCTATTGAAAAACTAAAGATACTGGACCCTTACAAActgtactttgtttttcattaaaaaaaaatagacccTACagttaatgcaaaacaaaccgGGTCTGTATACATTTGTCTGTAATTGTGAA

Function

GO: NA

KEGG:

id description
K06874 K06874; zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9460 lncRNA downstream 23960 44632752 ~ 44633282 (-) True G7684
TU9388 lncRNA downstream 106920 44549382 ~ 44550322 (-) False AMCG00004364
TU9363 lncRNA downstream 136424 44520175 ~ 44520818 (-) True G7609
TU9329 lncRNA downstream 248577 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 320672 44336271 ~ 44336570 (-) True G7585
TU9455 lncRNA upstream 40091 44708287 ~ 44709624 (-) False AMCG00004372
TU9488 lncRNA upstream 129310 44797506 ~ 44879219 (-) True G7704
TU9499 lncRNA upstream 470946 45139142 ~ 45143452 (-) True G7714
TU9534 lncRNA upstream 1149802 45817998 ~ 45852813 (-) True G7744
TU9625 lncRNA upstream 1519310 46187506 ~ 46189689 (-) True G7820
AMCG00004363 mRNA downstream 5970 44645284 ~ 44651272 (-) True AMCG00004363
AMCG00004360 mRNA downstream 39843 44606289 ~ 44617399 (-) True AMCG00004360
AMCG00004358 mRNA downstream 52933 44591677 ~ 44604309 (-) True AMCG00004358
AMCG00004362 mRNA downstream 71133 44576544 ~ 44586109 (-) True AMCG00004362
AMCG00004365 mRNA downstream 88682 44561668 ~ 44568560 (-) True AMCG00004365
AMCG00004369 mRNA upstream 7629 44675825 ~ 44680666 (-) True AMCG00004369
AMCG00004371 mRNA upstream 16376 44684572 ~ 44692353 (-) True AMCG00004371
AMCG00004372 mRNA upstream 40700 44708896 ~ 44711270 (-) False AMCG00004372
AMCG00004370 mRNA upstream 70474 44738670 ~ 44740860 (-) True AMCG00004370
AMCG00004373 mRNA upstream 78514 44746710 ~ 44804158 (-) True AMCG00004373
TU9361 other downstream 135029 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 2277836 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4808119 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7288420 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9242796 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 1638730 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1799929 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2216439 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2391700 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 5280665 49948861 ~ 49949592 (-) True G8310

Expression Profile