RNA id: AMCG00004361


Basic Information

Item Value
RNA id AMCG00004361
length 1506
RNA type mRNA
GC content 0.62
exon number 9
gene id AMCG00004361
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44534564 ~ 44538108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACACAAACACCACAAGGACTGCAAGAAGTCAAAAACAGCCTTACAGATCGGTTCTGGCTCCGAGAACTGCCTGCTCAGCCACTACAGCTCCAGCTACACCCGGCCCCACAGTAAGACTGTTTACCTGGGTAACACTGTTCTTCGGCCTCACCTCAGACTCTGCAACACTGTGCTGCCATGCTCCGGCCTGCTGCACCATGCAGTCAGTCTGTCTGAGATcacagtCAGCAAGCGCCCTTTCCGCACCCCCCTGCACCCCGCCCCACCCTGCATGGCTCTGCGCACAACCCAGCGCTCCGCCTATCGCCGCCCGCCCCCCAGCACTAGAGCACAGCCTGCACCCAGGCTGGAGAGTGTGTGTGGCTCACTGGAGCCTATTCAGAGCCACTCAGTCTACAGCCTGGACTTCCCAGCAAAGGAGGGGGAGGCGGTTGTAGTGCGGCGCCCCCCCACGAGCCTGCAGAGGCCCCCCCCCGGGGCCCAGCTCAGCCAGCACACCACAGCCCGAGACAGTTACCCAGACCACAGCGGGGTgctgctctctcgctctctccccaGCCTGGGAGAGCTGCCTGCTGTTGTGGgATCTCTGCTCTTCCCTGACCggaaggaggagatgaagaCGATAACGCAGAGTGAGTTCATCTGGAAAACGGGAAGCAAGCCAGAGCTGAGTCAGAGCATCTCCTGCAACCTCAGGGTCGAAGGTGAGCAGGACCTGCTGACGACCCATCACGAGGTGTACTGCGTTCATCCAGTGGAGGGCGCTGTGCCTACACGGAGGCAGCGCCCACCTGAGAAGGAAGAGGCTGTCAGAGCTGACCCGATGGAGTCTCTCACCAAGTACCGCTCCGATTACCCTGCTTATTACGGGCCCCCTAGGAGGAGCCTGCCTGCACGACCCCCCCCTGATAACCTGGTCATCAACCAGGCCCTCCGGAGGGACTTCAGGACGGTGCAGAGGGACACCTACCCTGGCTGGGACGCCTCCAAACACAGACGACCTGACCCTGCCCAGCTAAGGGAGGAGTTGTCTGACTGGGACAAGGACTGCCCCTTCCAAGGCGACACAGTAACCAAgCTGGCGTACCAGCCTCTTCCTTTGAACAGCCTCCAAGCACAGCCCCTGCAGCACCGGGCCCCATGTCTGAAGGTCCAGCCAGGCCTGTTCCACGATACCACCGCCAGCAAGGAGTTCTTTCAGGACTGGGGGGCCCAGCGGCGCCGGCGGTGTGGGGATCCCCATGATGGACTCTACATAAAACCCctgGGGAAGCTGGAGAGCGAGACCACCAGCTCTAGCACCTTCATCCCGAAGAGCACACGGAGGGTGCAGAACTGCAGGCCGGAGCAGAGGCCTGTGCAGGCTGAGGGGGAGCACGACTTCACCACTGTCCACAATGACACCTACAGGCCTCTCAGTCTCCCTGTGTGTCGGCTGCAGCTCTACCTCGCtcacaagcagcagcagcagaagcatCTAGTGCCCCCTGCTGTCCCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9363 lncRNA downstream 13746 44520175 ~ 44520818 (-) True G7609
TU9329 lncRNA downstream 125899 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 197994 44336271 ~ 44336570 (-) True G7585
TU9325 lncRNA downstream 356576 44177646 ~ 44177988 (-) True G7583
TU9322 lncRNA downstream 444784 44083097 ~ 44089780 (-) True G7580
TU9388 lncRNA upstream 11274 44549382 ~ 44550322 (-) False AMCG00004364
TU9451 lncRNA upstream 85082 44623190 ~ 44712051 (-) True AMCG00004372
TU9453 lncRNA upstream 85082 44623190 ~ 44712051 (-) False AMCG00004372
TU9460 lncRNA upstream 94644 44632752 ~ 44633282 (-) True G7684
TU9455 lncRNA upstream 170179 44708287 ~ 44709624 (-) False AMCG00004372
AMCG00004356 mRNA downstream 6905 44525064 ~ 44527659 (-) True AMCG00004356
AMCG00004366 mRNA downstream 25746 44500874 ~ 44508818 (-) True AMCG00004366
AMCG00004357 mRNA downstream 38802 44487408 ~ 44495762 (-) True AMCG00004357
AMCG00004349 mRNA downstream 423439 44102083 ~ 44111125 (-) True AMCG00004349
AMCG00004350 mRNA downstream 442731 44087376 ~ 44091833 (-) True AMCG00004350
AMCG00004364 mRNA upstream 2055 44540163 ~ 44561575 (-) True AMCG00004364
AMCG00004365 mRNA upstream 23560 44561668 ~ 44568560 (-) True AMCG00004365
AMCG00004362 mRNA upstream 38436 44576544 ~ 44586109 (-) True AMCG00004362
AMCG00004358 mRNA upstream 53569 44591677 ~ 44604309 (-) True AMCG00004358
AMCG00004360 mRNA upstream 68181 44606289 ~ 44617399 (-) True AMCG00004360
TU9361 other downstream 12351 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 2155158 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4685441 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7165742 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9120118 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 1768818 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1930017 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2346527 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2521788 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 5410753 49948861 ~ 49949592 (-) True G8310

Expression Profile