RNA id: AMCG00004369


Basic Information

Item Value
RNA id AMCG00004369
length 1434
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00004369
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44675825 ~ 44680666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagtttcagttttcattcagcAGCAAGGAAAGCAACTCGAAAAGTGCTTTGGGTTGGTTAATAGTTTTGTTGAAAAGGTAAACAGATTTGATCTCATATATACTGGTAGACATacacttttctttccttagtaTATAAAGGTACCATTTTAAAAACCAAGATCCTCTGTGAACGTGGGAGTTTGTGAATGGATTACACGTTCAATCTAAGCTCTGTGCTGAAAAATTCGGACTCGGCACAAATGAAGCCATGCATCTTCACCGTGTGGCTCTCCGTGCTCACCTGTGTGGGTTGCACAGACACAGACACCTCAATCAGAGTTGAAAGTGAGCGAGCGGAGGTCTGTGGGGAGCTGGGGAAGTCCGTGCTTCTGTCTGTGAGCTACAACCTGCCCAGGAATAATCTGTTAGATACAGCATGGGAGATGCAAAGCAGCACGTCATACATGAGCATATACCGGGGCTCTAGCACTACGAAAGCCTATCAAGGCAGAGTGGAAGTATTCCCCAACGGCTCCCTGCTGCTGAAAGATCTCAGGTCCTCGGATGAAGCCCGCTACACGTTCAGTGTTGCTCTGAAAAGTGGAGAGGAGCGTGAAGCCACTGTTGATCTCTGCATTGAGGACCGAGTGCAAAACTTGACAATTGAAAAGATTCCTAACCCCTCCGGCTCCGGGCAGAGTGCGAGGCTGGTGTGCAAGGCACCGAAAGCAAGACACCTGCGTGTGCTGTGGCAGGGAGTCAACTCATCCTCCCAGGTCTGGCGCTCCTTCAGGGATTTTGAGGAGGCCGAGGTCATCGTCATGTCCCAGCACTGTGGAGAGCTTGTCTGTGTAGCTGAAAACAATGTGAGCCACCTGGAGATGCGACACAAGCTGAACAGAACATTGGCCACTTGTGAGAATtGTGAGCTGCAGTGCAAcgaaatggaaaaaacaagtgAAGTGAGCACCTTGGCAGTTGCTCTGTCTGTGGGTATCCTAGTCCTGCTGATTGCATCTGCCGTGATACTCTGCATCCGTCGCCACAGAACCAAGTGTGGTAAGAggaaagaggagaaaaaaatggtTGATTCTACACAACAACGTTTACAACAGCCTGGCAAAGACACCAGCACTGGCACGAAACTTGATAATGCCACACAGGAACAGATTGACATGATTTTATAATTCCTAATCTGCATGCATGCTGTTCAGTCAGCCCTCTATATGGAGCAATCTGCCACGTTTTTGTAACGTGTGTATTGTGGGTTGCTCAACAGACTGTTTTATTCTGAAAcactatctatatataaatacatatacatgtatgatACCATAATCCAGTTTTGGATGGATAGGTGATATCCCAGCTTCTACTTTATCCCCAAGACAGACAACAACGAAAACCATCATTCTGAGTATTAcaaggaattaaaaataataatgcacgCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9460 lncRNA downstream 42543 44632752 ~ 44633282 (-) True G7684
TU9388 lncRNA downstream 125503 44549382 ~ 44550322 (-) False AMCG00004364
TU9363 lncRNA downstream 155007 44520175 ~ 44520818 (-) True G7609
TU9329 lncRNA downstream 267160 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 339255 44336271 ~ 44336570 (-) True G7585
TU9455 lncRNA upstream 27621 44708287 ~ 44709624 (-) False AMCG00004372
TU9488 lncRNA upstream 116840 44797506 ~ 44879219 (-) True G7704
TU9499 lncRNA upstream 458476 45139142 ~ 45143452 (-) True G7714
TU9534 lncRNA upstream 1137332 45817998 ~ 45852813 (-) True G7744
TU9625 lncRNA upstream 1506840 46187506 ~ 46189689 (-) True G7820
AMCG00004359 mRNA downstream 7629 44657242 ~ 44668196 (-) True AMCG00004359
AMCG00004363 mRNA downstream 24553 44645284 ~ 44651272 (-) True AMCG00004363
AMCG00004360 mRNA downstream 58426 44606289 ~ 44617399 (-) True AMCG00004360
AMCG00004358 mRNA downstream 71516 44591677 ~ 44604309 (-) True AMCG00004358
AMCG00004362 mRNA downstream 89716 44576544 ~ 44586109 (-) True AMCG00004362
AMCG00004371 mRNA upstream 3906 44684572 ~ 44692353 (-) True AMCG00004371
AMCG00004372 mRNA upstream 28230 44708896 ~ 44711270 (-) False AMCG00004372
AMCG00004370 mRNA upstream 58004 44738670 ~ 44740860 (-) True AMCG00004370
AMCG00004373 mRNA upstream 66044 44746710 ~ 44804158 (-) True AMCG00004373
AMCG00004376 mRNA upstream 494666 45175332 ~ 45187413 (-) True AMCG00004376
TU9361 other downstream 153612 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 2296419 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4826702 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7307003 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9261379 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 1626260 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1787459 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2203969 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2379230 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 5268195 49948861 ~ 49949592 (-) True G8310

Expression Profile