RNA id: AMCG00004370


Basic Information

Item Value
RNA id AMCG00004370
length 699
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00004370
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44738670 ~ 44740860 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCTCAATTTCACATCCCCTGGCCACCCCATGCCAGCTCAGAGGCCAACGTCGTTCTTCATTGAGGACATCTTGCTGCACAAGCCCAAGCCTCTGAGGGAAGTGTTTTCCTCGCCCTTCGGCAGCTCCCTGGCGTCCCGGGTGCCCCTGCTAGAATATGGGTACCCCCTGATGCCAGCCCCCACGCTGCTggcaccccacccccaccacgcACTGCACAAGCCCGAGCACCACCCCTACTTCCTGACCGCGTCGGCCGATGTGTCAAACATCAAAAGGCATTTTTCTCTGCACCACCCGGAGCTGCCCGGGAAGCACTGCCGCCGCAGGAAGGCCCGGACGGTCTTCTCCGACTCGCAGCTATCGGGGCTGGAGAAGCGCTTCGAGATACAGCGGTACCTGTCAACCCCGGAGCGGGTGGAGCTGGCCACGGCCCTCAGCCTGTCGGAGACACAGGTAAAAACGTGGTTTCAAAACAGAAGGATGAAGCACAAGAAGCAGCTGCGGAAAACGCAAGACGAGCAGAAGAGCCCGGGCGCCCTGGAGCCGCCTGTGGAGAGTGAGGGCGCAGGGGCGGACAACAACCCCCAGGAGGGGAAGATCTCCGGAGGACAGGACTCCTACCTGCTGGAGGAGAATGAAGACGACGTGGACATCGAGGACGACGATATCTGCTCCCCTGATCATTTATTATAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24874 BSX; brain-specific homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9451 lncRNA downstream 26619 44623190 ~ 44712051 (-) True AMCG00004372
TU9453 lncRNA downstream 26619 44623190 ~ 44712051 (-) False AMCG00004372
TU9455 lncRNA downstream 29046 44708287 ~ 44709624 (-) False AMCG00004372
TU9460 lncRNA downstream 105388 44632752 ~ 44633282 (-) True G7684
TU9388 lncRNA downstream 188348 44549382 ~ 44550322 (-) False AMCG00004364
TU9488 lncRNA upstream 56646 44797506 ~ 44879219 (-) True G7704
TU9499 lncRNA upstream 398282 45139142 ~ 45143452 (-) True G7714
TU9534 lncRNA upstream 1077138 45817998 ~ 45852813 (-) True G7744
TU9625 lncRNA upstream 1446646 46187506 ~ 46189689 (-) True G7820
TU9624 lncRNA upstream 1447130 46187990 ~ 46189689 (-) False G7820
AMCG00004372 mRNA downstream 27400 44708896 ~ 44711270 (-) False AMCG00004372
AMCG00004371 mRNA downstream 46317 44684572 ~ 44692353 (-) True AMCG00004371
AMCG00004369 mRNA downstream 58004 44675825 ~ 44680666 (-) True AMCG00004369
AMCG00004359 mRNA downstream 70474 44657242 ~ 44668196 (-) True AMCG00004359
AMCG00004363 mRNA downstream 87398 44645284 ~ 44651272 (-) True AMCG00004363
AMCG00004373 mRNA upstream 5850 44746710 ~ 44804158 (-) True AMCG00004373
AMCG00004376 mRNA upstream 434472 45175332 ~ 45187413 (-) True AMCG00004376
AMCG00004377 mRNA upstream 528324 45269184 ~ 45272999 (-) True AMCG00004377
AMCG00004381 mRNA upstream 1120435 45861295 ~ 45867466 (-) True AMCG00004381
AMCG00004382 mRNA upstream 1133587 45874447 ~ 45890096 (-) True AMCG00004382
TU9361 other downstream 216457 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 2359264 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4889547 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7369848 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9324224 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 1566066 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1727265 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2143775 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2319036 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 5208001 49948861 ~ 49949592 (-) True G8310

Expression Profile