RNA id: AMCG00004371


Basic Information

Item Value
RNA id AMCG00004371
length 2462
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00004371
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44684572 ~ 44692353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTACTTAGGAAGATACCGGTTTGCGGGTCGCTCTCAGTGCAGTGCGGAGACGGCTAGAGCATCgcatatttacattgaaatCAGGTAATTATATTCGGCACTTAATTACACTGTAGTCAGGTAACCACATCTTCACAATTTTCTTCCCCTTCCAAATGGTCTCCAAAAAAGCTTAGACCATTGTGCAAGAATAGTATCATGGAATTTTCTCCCCTCTATACAGAAACCATGTCGAAGGGAACAGCAGTGGGTATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAGTGGAGATCATTGCCAACGACCAGGGCAACAGGACCACGCCCAGCTACGTGGCCTTCACAGACTCTGAGCGTCTGATTGGAGATGCTGCCAAGAACCAGGTGGCCATGAACCCCACCAACACAGTGTTCGatgCCAAGCGCTTAATTGGTCGCAGGTTTGAAGACACCGTAGTTCAGTCTGATATGAAGCACTGGCCATTCAATGTCATCAGTGACAGTGGTCGCCCCAAAGTTGAGGTTGAGTACAAAGGAGAGCTCAAGAACTTCTACCCTGAAGAGATCTCCTCCATGGTCCTGACAAAGATGAAGGAAATTGCAGAGGCGTACTTGGGGAAGACTGTAACCAATGCTGTCATTACTGTACCTGCTTACTTCAATGACTCCCAACGTCAGGCCACAAAGGATTCTGGTACCATTGCTGGTCTCAATGTACTGCGCATAATCAATGAACCAACTGCGGCTGCCATTGCCTATGGGTTGGATAAGAAGGTGGGCGCAGAGAGGAACGTCCTGATCTTCGATCTTGGCGGCGGCACTTTCGACGTGTCCATCCTGACCATCGAGGATGGGATCTTCGAGGTGAAGTCCACTGCTGGGGACACCCATCTGGGTGGAGAGGACTTTGACAACCGCATGGTCAACCACTTCATTGCAGAGTTCAAGCGCAAGTACAAGAAGGACATCAGCGACAACAAGAGGGCCGTCCGCCGTCTCCGCACCGCCTGCGAGCGGGCAAAGCGCACCCTGTCCTCCAGCACACAGGCCAGCATCGAGATCGACTCCCTGTATGAGGGCATCGACTTCTACACCTCCATCACCAGGGCGCGCTTTGAGGAGCTCAACGCAGACCTGTTCCGTGGCACCCTGGACCCCGTGGAGAAGTCCCTGCGTGATGCCAAGCTGGACAAGGCCCAGATCCACGACATCGTGCTGGTGGGGGGCTCCACCCGTATCCCCAAGATCCAGAAGCTGCTGCAGGACTTCTTCAATGGGAAGGAGCTGAACAAGAGCATCAACCCTGATGAGGCTGTGGCCTACGGAGCAGCTGTCCAGGCCGCTATCCTGTCTGGTGACAAGTCTGAGAATGTGCAggacctgctgctgctggacgtCACCCCCCTTTCCCTGGGTATCGAGACAGCCGGCGGTGTCATGACCGTCCTGATCAAGAGGAACACCACCATCCCCACCAAGCAGACCCAGACTTTCACCACCTACTCTGACAACCAGCCCGGTGTGCTGATTCAGGTGTATGAAGGTGAGAGAGCCATGACCAAGGACAACAACCTGCTGGGCAAGTTTGAGCTGACCGGCATCCCCCCGGCTCCCCGTGGCGTTCCTCAGATTGAGATTGAGGTCACATTCGATATCGACGCCAATGGGATCTTGAATGTCTCTGCAGTTGACAAGAGCACTGGCAAGGAGAACAAGATCACCATCACCAATGATAAAGGTCGGTTGAGTAAGGAGGATATTGAGCGCATGGTCCAGGAGGCTGAGAAGTACAAGGCTGAGGATGACGTCCAGCGTGACAAGGTGTCCACAAAGAACTCTCTGGAGTCCTATGCCTTCAACATGAAGTCCACAGTGGAGGATGAGAAGCTGCAGGGCAAGATCAGTGATGAGGACAAACAGAAGATCCTGGAGAAGTGCAATGAGATCATTGGTTGGCTGGACAAGAACCAGACGGCGGAGAGGGAAGAGTATGAGCACCAGcagcaggagctggagaaggTGTGCAACCCCATCATTACCAAGCTGTACCAGAGCGCAGGGGGCATGCCTGGTGGGATGCCTGGTGGGATGCCAGGGGGCTTCCCTGGGGCGGGGGGTGCTCCCTCGGGCGGTGGGTCCTCAGGCCCAACCATTGAGGAGGtggattaattttaaaaccCCTAATGCAAAAAAACGAAATGCTGTAACCCCACGGACCCAATCTGTAAAGCCAAGGCTGGCCATTGGCTAttcccttatttatttaaacccaTTTTTAGCTGCTAAGTTTATGTTGCTGAAATTACTTGAATCTTCCAGCTGCTGCAGGTGGCTGGGtagttactgtactgtattgaagCTGGCTAAAGTTGGCTGTACATTTTGAGTCCTGGTGAattaaaaggaaaggaaaacaaacttctctcctgtgtttattttgt

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9460 lncRNA downstream 51290 44632752 ~ 44633282 (-) True G7684
TU9388 lncRNA downstream 134250 44549382 ~ 44550322 (-) False AMCG00004364
TU9363 lncRNA downstream 163754 44520175 ~ 44520818 (-) True G7609
TU9329 lncRNA downstream 275907 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 348002 44336271 ~ 44336570 (-) True G7585
TU9455 lncRNA upstream 15934 44708287 ~ 44709624 (-) False AMCG00004372
TU9488 lncRNA upstream 105153 44797506 ~ 44879219 (-) True G7704
TU9499 lncRNA upstream 446789 45139142 ~ 45143452 (-) True G7714
TU9534 lncRNA upstream 1125645 45817998 ~ 45852813 (-) True G7744
TU9625 lncRNA upstream 1495153 46187506 ~ 46189689 (-) True G7820
AMCG00004369 mRNA downstream 3906 44675825 ~ 44680666 (-) True AMCG00004369
AMCG00004359 mRNA downstream 16376 44657242 ~ 44668196 (-) True AMCG00004359
AMCG00004363 mRNA downstream 33300 44645284 ~ 44651272 (-) True AMCG00004363
AMCG00004360 mRNA downstream 67173 44606289 ~ 44617399 (-) True AMCG00004360
AMCG00004358 mRNA downstream 80263 44591677 ~ 44604309 (-) True AMCG00004358
AMCG00004372 mRNA upstream 16543 44708896 ~ 44711270 (-) False AMCG00004372
AMCG00004370 mRNA upstream 46317 44738670 ~ 44740860 (-) True AMCG00004370
AMCG00004373 mRNA upstream 54357 44746710 ~ 44804158 (-) True AMCG00004373
AMCG00004376 mRNA upstream 482979 45175332 ~ 45187413 (-) True AMCG00004376
AMCG00004377 mRNA upstream 576831 45269184 ~ 45272999 (-) True AMCG00004377
TU9361 other downstream 162359 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 2305166 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4835449 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7315750 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9270126 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 1614573 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1775772 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2192282 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2367543 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 5256508 49948861 ~ 49949592 (-) True G8310

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004247 False 1953 mRNA 0.50 8 NC_007121.7 29850330 ~ 29853416 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_14352375_14355516.mRNA True 1947 mRNA 0.51 8 CI01000304 14352375 ~ 14355516 (+)