RNA id: AMCG00004378



Basic Information


Item Value
RNA id AMCG00004378
length 240
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00004378
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 45302565 ~ 45307246 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACAGTAGGCTGGAAGCTGAGTTGGTGATGCTCAAGTCAAACTACCAGTACAGCAGCTGTGGGGATGTGGTGGATCTACTGAAGACAATGGTGCCTGAGAATGATTGTAAGACACTCTTTAATGGAGCCCTGCTCGGGGAATCTCCTGTCTTAAGACAGAGAGTCCTGACCTTGGTCCAGCAGCATGCTTTTGGGACTGACCTGAATGGCGTCTGTGGGCCCAATCCCTTTGCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9437 lncRNA upstream 661833 44636305 ~ 44640732 (+) False AMCG00004355
TU9429 lncRNA upstream 685166 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 714581 44587706 ~ 44587984 (+) True G7644
TU9402 lncRNA upstream 727568 44574331 ~ 44574997 (+) True G7638
TU9368 lncRNA upstream 759422 44530340 ~ 44543143 (+) True G7614
TU9558 lncRNA downstream 612144 45919390 ~ 45921805 (+) True G7765
TU9695 lncRNA downstream 1083142 46390388 ~ 46390751 (+) True G7879
TU9725 lncRNA downstream 1408532 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 1414583 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 1684971 46992217 ~ 46997805 (+) True G7949
AMCG00004375 mRNA upstream 159116 45125924 ~ 45143449 (+) True AMCG00004375
AMCG00004374 mRNA upstream 205622 45068915 ~ 45096943 (+) True AMCG00004374
AMCG00004368 mRNA upstream 569966 44714025 ~ 44732599 (+) True AMCG00004368
AMCG00004367 mRNA upstream 590991 44708013 ~ 44711574 (+) True AMCG00004367
AMCG00004355 mRNA upstream 662061 44618185 ~ 44640504 (+) True AMCG00004355
AMCG00004379 mRNA downstream 514655 45821901 ~ 45859274 (+) True AMCG00004379
AMCG00004380 mRNA downstream 655631 45962877 ~ 45967557 (+) False AMCG00004380
AMCG00004384 mRNA downstream 674379 45981625 ~ 45999108 (+) True AMCG00004384
AMCG00004387 mRNA downstream 873292 46180538 ~ 46187407 (+) True AMCG00004387
AMCG00004388 mRNA downstream 929111 46236357 ~ 46254391 (+) True AMCG00004388
TU9000 other upstream 2611456 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 3086203 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 3795334 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 8302407 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 8410819 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 654764 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 2839642 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 3625204 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 4844018 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 5436545 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile