RNA id: AMCG00004409


Basic Information

Item Value
RNA id AMCG00004409
length 5520
RNA type mRNA
GC content 0.50
exon number 26
gene id AMCG00004409
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48404180 ~ 48425709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtggGCTCAGTGGACGGACGTGGTTGAGACACGAAGCATGGTGCACACGCCCAACACGTGTCCGTCAACGCCCCCCGGGGTCCGTGAGCGCGCACGCTGTCGACGTGCGCGTCTCCCGCACGGCGAGACCGATCCACGGGGGCGCGCCGGGTGTGCGGCTGGCGGATGGAGGAGTAGGCGCGGATCTGCTGCGGGGGGAGAAGGTTTCCTTGAAAACTGCCGAAAAAAGAGGAGGATCGGGTTTGCAGCCATGACCGCCGAGCAGCCGTGCGAGCAGGGGGACTCCTCCGGCCATGCGAGTCACATTCTGATCAGCCAGCTGAGAGAGATCACGGGCACCCAGGACGTTGAGATCTTACAGAGAGCTCTGAAGGCGGCCAATGGAGACATGAGTCAAGCAATCAGTCTGCTAACTGCCCAGGTGCCAGAGGAAGATGTCATAGCGGTGGAGCCTTCTGATACGGAAGGAAGTGCCGTGGGCAGGAAAGCGCCAACAAAAGTCATCGACCTTACTGCCAGCGGTGACAGAGATGACCTCCAGACCGCCATCCAACTAAGTTTGCAGGAGTCCCAGAGTGGCCAAGGGGAAGACAGGGATTTAAACCGGGCTCTGGAGGCGAGTGTGGCTGAGAATAAAGCTCGCGTGAAGAGAAAGCGGTGCGAGGCCCTGGTGGAGAGCTCCAACCCTGCCGACTGGATCAGACAGGACGACTGGCCGGTGGGCCTGAGGAATGTGGGCAACACCTGTTGGTTCAGTGCTGTCATACAgtctttgttCCACCTGCCCGAATTCCGAAGACTGGTCCTGAATTACTGCTTGTCGGAGAGCGTCCTGGAAAAGTGCAAGAGCCACAGCGAGAAAAGGAACATCGCCTTCATGCAGGAGCTGCGATGCCTCTTCGCCCTGATGGTGGGCTCCAGCCGCAGGTTTGTGGACCCCTCGGCCGCCGTGGAGCTCCTGAAGGATGCGTTTCGGACCAGCGAAGCTCAGCAGGATGTCAGTGAGTTCACCCACAAACTCCTTGACTGGCTAGAGGATGCTTTCCAGCTTGCAGCAAATGGAAGTAGTCCTGAAGATAAGCAAGAGAACCCAATGGTGCAGCTTTTCTATGGAACATTTGTGGCTGAACGAACCCACGAAGGCAAGACCCTCTCCAACATCGAACAGTTTGGACAGTATCCTCTGCAGGTCAATGGCTTCAACAACCTGGATGAGTGTCTGGAAGGGGCCATGGTGGAGGGAGAGATCGAGGCCCTGCACTCCGATCAAACCGTACATCCCGGACAGGAGCGTTGGTTTTCAAAGTTACCACCGGTCCTGACCTTTGAACTCTCCCGGTTTGAGTTCAATCAGTCTCTGGGACGGCCAGAGAAAATTCATAAAAAATTGGAGTTCCCCCAGGTCATATACATGGACAGGTATCTTCACAAGAACATGGAGTTGACccagaggaggagaggggaggcgaAGAAGCTGAAAGAGCAGCTGACAGCTCTGCAGCAGAAACTGGAGAGcTACAACAGTTACGGCTCAGGGCCAGCTAAATATCCCTTGGCAGATATGCTGCAGTACGTGCTGGAGTTTGCCACCACCAAGCCTTCCAGCGTCTCTCCTGCGGAGGACGTCCGAGCGGCCTCGCCCTCTCCAGCCACGTCACTCGATGCCAGCGCACAGACAGAGCCCACACCAGAGGAAACCAGTCCATCAGAAGAGGAGGACACTACCTCGCCCGACTGTATAAACTGCCAGGCTGCTCCCACCCAGAGGACACCCATCTACAAGCCATTCACGCAGTGCAGGCCCCCCATGgagccacccccccaccccgccccccaCAGCGTGTCCGTGGAGGAGCTGCACTTCGTCAGGGGCTGCCTGCAGCGCTGGAGGGCCGAGGTGGAGCACAACATTCAAGAGCTCAAAGACAGTATTGACAGAGTCAGCCACGCACTGGAAAACATGTACTCGGATGGCAGTTTATGCCAGGTGCCTTACCGACTGCACGCGGTGCTCGTGCATGAAGGCCAGGCTTCAGCCGGCCACTACTGGGCCTACATCTATGACCATGGCCGGCAGCGCTGGCTCAAGTACAACGATATCTCGGTCACCGAGTCGACCTGGGAGGAGTTGGAGAGAGACTCCTATGGCGGGATGAAGAACGCCAGTGCCTACTGCCTCATGTACATCGACGATAAGCTGACACACCTCATAGCAGAGGACAGTGACATGGAGACGGGGCAGGTGCTACGGGGGATGGACTCACTGCCAACCATCCTGAGGCACTATGTCCGGGAGGACAACCACTGGTTCCAGCAGGAATTGGAGGAGTGGGAGGAGCAGTTTCGCAAAGTCCCGCAGAAAGAGTCCCCTGTTCCTGTggcaacagacacacaggaatCTTCCTCTGAACCGCCCGCTGAAGCGGCGCCCAGTCAGCCAGCCGGCCGCTCGCTGGTGTCAGAACACGCGGTGATGGTGAAGGAGCAGACGGCACAGGCTATCGCCAACGCGGCCGACTGCTACCAGAAGAATGGTGTGGAGGCCGCCCTCCATGAGGGCTCTGAGGCAGGGGCTGAGGCAGGGGCACGGGCAGAGGGCGGCAGTTCTGAGCCCGAGTCCACGCCTGATTCGGAGTCTGAGGCTGAAGCCCAGCCCCAGCCGCCGCAGCCTTCTGAGGCAGAGAATAGAGAGGCTGAGAGCCGGGTCTCCGAGGTGGAGATTCCCAGTGTAGGAAAGATTCTTGTCCGAGCTGATGCCGATGGGTATAACGAGGAGATGATGCTTACTCCAGCCATGCAAGGAATTCTCCTGGCTATTGCTAAAGCAAGGCAGGTCTTTGACAAGGACGGGCCCGAAGCGGCTCTCATTAAGGCTTTTCACGAGGAGTACTCCCGCCTGTACATGCTGGCGATAGAGAAGGCCACGCCGCAGAACGACCCGCGCCTCCAGCACGTCCTGGTCTACTTCTTCCAGAACCGAGCCCCGAAACGCGTCATCGAGAGGGCTCTGCTGGAGCAGTTTGCAGACCGGAACCTCAGCTTTGATGAGAGGTCCATCAGTATTATGAAGGAGGCTCGATCCAAGCTGCGTCTAATTGGGCCAGAGGACATGGATGTGGAGGAATACACGAAATGGCACGAAGACTACAGCCTGTTTCGGAAAGTGTTTGTGTATCTCCTGACGGGCCTGGAGCAGTATCAGAATGGAAAAATAAGGGAAGCTCTGAACTACCTGGTGTACGCCTACCAGAACAACACGATGCTGCTGAGGAATGGGGAGAACAGAGGCGTGGAGGAGTCGCTCATTGCACTTTATAGGAGGAAATGTCTAACCGAGCTGAATGAGAAAGCAGCAACTCTGTTCAAGAGCGGTGAGGACAGCGATGTGATGGAGGGGATGAGCATCATGAATGACATGGTCATTCCCTGCATGCACCTGATGATTAGCAATGATATCAGCCAGGAGGACCTGGACGCCATCGAGGTCATGAGGAGCCGCTGGTGCTCCTACCTGGGCCAGGACATGGATGCCACCCTACAAGAAAAACTCGGGGAGTTCTTGCCCAGGCTGCTGGACTGCTCGGCAGAAGTCATCGTCCTAAAGGAACCGCCGAAGATCCGTCCCAACTCGCCGCACGACCTGTGCAGCAGGTTCGCGGCTGTATTGGAGTCCATCCATGGCAACTCGATCGTGACGGTCAAATAAGACTTTGATGAACAAAAGGAGAAAACCCAcaactaaaatgaaaagcacatatCTATTTATATCGTCCAGACTTTGAACATTTTTAAGGCACTTTTCCACCAAAACTGAAGGGTGGCGTAGCTCTGTCAGCCCCATTCTTGATTAAGCATAAACTGCAGAGGAAACAGATACTGATCTACCACTTCACAGCAACGGTCCTGAAGATGTTCCATGGTAGTtgtcacatttaatttgtctgtcACTTTGTTCTTTCACAATTTGTGGTCAGCACTGTACCATCAGGTTCAATATCGATCAAGGACTGGGATTTTATCTTAACATTGCCTAAATTGCCTTATTCTGTTTCTGGTTTTTATTCTATTTCTAGTCTTTTTAAGCCTTTTCAAGCCTTTTCAACAGTTGTACAAGAAATCTGAAGCACTAACACTTGACTAGTTGACCCCCACCTTGAAAACTAACTACTATCTTAACAACACATAATTCCTCGAGTGAAAAAGCAATACTAATTCTCCCATTTAGTTACACTATAGAGATTTCAGTAAGCATCCATTACTCCAGCTGAGTATTTTTCCCATAAAAGCAATAAGACTGTTGCCTTGAACAAAAGCTCATGATCTGCAATGgccattgtttttgtgtgagaactgacatatatttatatttaaggcCCTGTGAACTTCATGGATGACTGAACAAGCAACACACTGTCAACAAGGGACCTTCAACGGCAACAAACGCATCAAATAAtggcaaaatataaatgtatttatttataattttaattggcAGGGGCTCACTTGaagaatatatttatgaataataaCATACAGTTCTTCAGATTTTAAGGTTCACTGCAAGAATCAGTCCTTACAGTTTTATTCGTCAACTATTTTAATCCTATTTGGTGAACGTGCGCAAAGGGGAGGAAACCCAATTGCCTCCCTGCCTTCCTACTGACTGATGCCCACTCCCTACTTTGAAGCCATGATGTTTAAACCAAAGAAAGTGTTACCACACAAAGCAATCTGTTATACTTTTCAGCTTTATCTTCAATAAACTTTCACTCTTTCCCTTGACCTCTGGCACGtctatgatttttctttttctttttccttttacttcttcattctttcCCTCACACATACTgttttgtccttttgttttttttgtagacATACATTTGGAGTATTAATAGATACTTTTGGTCATTGCTGTTATGAAACACAGTCTACctcaaaacaatgtttattttaaatgtttctataaaactgtaaaatatgttttgctgtaATCCACTCTCCCTGTTTTTATGAAGATCTTTTCAAAGGAAGTGCAAAATGCATCTTGCTGGCCATGTGTTTTCTGGTGAGAAGGGATTGTGGTTTAAGTTTAATCCTGGGTTTTAGTTCATTTTTAGGATTGCGTGTATGAAATGCCTAGAGTTTGCTAAACTCATgttcttcaatttgttttctgtgtgtcttgttttttatatgtataacaGAATTAAATTGTTGCTCTGGAATATCTGTCTTATCAGCTTTTATATGCCAGCTTTACATGGTTATGGCTCTCTATGTTGCTTTGAGATGCAGTGCTTTTTTTAGggttttttttacagtttgtgtaAACACTGGGTGGCTTCGTCATCAAGAAGAACAGAGACATCACTGTGTCATGTGGAGGTACCAGGTAAATGCCCTGTTTCTACTTTATTGTGACCTATTACTCTGGATAAATTCTTTAGTAATTCACTTTCCACTGTTTGCTCTTCCCACAATTCAATGTAGAATTTTCAGGAGAGATGTCCTA

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K21122 USP28; ubiquitin carboxyl-terminal hydrolase 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9819 lncRNA downstream 717613 47685925 ~ 47686567 (-) True G7979
TU9818 lncRNA downstream 718306 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 755598 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 1097591 47296874 ~ 47306589 (-) False AMCG00004403
TU9767 lncRNA downstream 1511150 46890942 ~ 46893030 (-) True G7936
TU9903 lncRNA upstream 37472 48463181 ~ 48470217 (-) True AMCG00004412
TU9987 lncRNA upstream 520357 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 520357 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 529667 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 531085 48956794 ~ 48958363 (-) False AMCG00004420
AMCG00004411 mRNA downstream 2645 48400326 ~ 48401535 (-) True AMCG00004411
AMCG00004410 mRNA downstream 3903 48398817 ~ 48400277 (-) True AMCG00004410
AMCG00004403 mRNA downstream 1330361 47048124 ~ 47073819 (-) True AMCG00004403
AMCG00004402 mRNA downstream 1401729 46998008 ~ 47002451 (-) True AMCG00004402
AMCG00004398 mRNA downstream 1516426 46883292 ~ 46887754 (-) True AMCG00004398
AMCG00004412 mRNA upstream 42850 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004413 mRNA upstream 157430 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004418 mRNA upstream 463368 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004417 mRNA upstream 485288 48910997 ~ 48930564 (-) True AMCG00004417
AMCG00004419 mRNA upstream 506756 48932465 ~ 48934416 (-) True AMCG00004419
TU9801 other downstream 1097591 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 1516843 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 1935746 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2096861 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 3881967 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 1523152 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 1579423 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 2245357 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 2298158 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 3527955 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile