RNA id: AMCG00004410


Basic Information

Item Value
RNA id AMCG00004410
length 678
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00004410
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48398817 ~ 48400277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCAGTCCATTGTAGGGTCTATGATTGATGCTCTCGTGGTGGGATGCATGTTGGTGAAGATCTCCAGGCTGAGAAAAAGGGCCCAAACGCTGATGTTCAGCAAACACGGGGTGGTGTCGCAGCGAGACGAGCAGCTGTGCTTGATGTTCCGTATCGGTGATCTTCACCACAGCCACATGGTGGATGCCAAAATAAGAGCCAAGCTCATCAGGTCCAGACACACCAATGAAGGAGAGTTTATCCATCTGGGGCAGTCTGAGCTTAACCTTGGTCATGACACTGGTCAGGACAGGCTCTTCTTGGTGGAGCCGCAGATCGTCAGCCACGTGATCAACGACCACAGCCCATTCTGGGATATGAGCGCTGAGTCTTTGAAAAGGGAAAGGACGTCATACACGGATGATGAAATTCTGTGGGGCCAACGCTTCGAGCCCTGCGTGATCCTGAAGAAAGGGGTGTTCAGAGTGGACTACAGCCAGACCTTCGAGGTGCAAACGTCCCTGCGCAGCGCCAAGGAGATGACTACTCTGCATGACTTGGAGCAGAATGAGAGGTCCACACTGAGCCTGTGCTGGGACTGCACTGCCCACACCTGCCCCTCGGCAGACCTTGACCACAGAACCAGCAGTATCCACAACATCACAGAAATGAGTGAAAGTAATTTGGACATATGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9819 lncRNA downstream 712250 47685925 ~ 47686567 (-) True G7979
TU9818 lncRNA downstream 712943 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 750235 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 1092228 47296874 ~ 47306589 (-) False AMCG00004403
TU9767 lncRNA downstream 1505787 46890942 ~ 46893030 (-) True G7936
TU9903 lncRNA upstream 62904 48463181 ~ 48470217 (-) True AMCG00004412
TU9987 lncRNA upstream 545789 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 545789 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 555099 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 556517 48956794 ~ 48958363 (-) False AMCG00004420
AMCG00004403 mRNA downstream 1324998 47048124 ~ 47073819 (-) True AMCG00004403
AMCG00004402 mRNA downstream 1396366 46998008 ~ 47002451 (-) True AMCG00004402
AMCG00004398 mRNA downstream 1511063 46883292 ~ 46887754 (-) True AMCG00004398
AMCG00004392 mRNA downstream 2062803 46319298 ~ 46336014 (-) True AMCG00004392
AMCG00004391 mRNA downstream 2098451 46289169 ~ 46300366 (-) True AMCG00004391
AMCG00004411 mRNA upstream 49 48400326 ~ 48401535 (-) True AMCG00004411
AMCG00004409 mRNA upstream 3903 48404180 ~ 48425709 (-) True AMCG00004409
AMCG00004412 mRNA upstream 68282 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004413 mRNA upstream 182862 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004418 mRNA upstream 488800 48889077 ~ 48895001 (-) True AMCG00004418
TU9801 other downstream 1092228 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 1511480 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 1930383 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2091498 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 3876604 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 1548584 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 1604855 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 2270789 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 2323590 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 3553387 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile