RNA id: AMCG00004417


Basic Information

Item Value
RNA id AMCG00004417
length 2507
RNA type mRNA
GC content 0.44
exon number 20
gene id AMCG00004417
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48910997 ~ 48930564 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAACGTAAATCCGGTCATTTtcaagctttttaaaattactgtCTTTAGCTGTGTAGTTTTATATTTGAGAACACTTGATCACACTCTGGAAACAgtatggaaaatgaaaaacaagatcTTGAAAGGTTTCTGAAGAATGTTGATGAGATAAgTGAGCTGGTTAAAGAGCTGAACTCTTCTGACCCTGAGTGTCAAAAGAAGGCTTCTGAAAAAGCAGACCAACTCATCTGTTGTTTGAAGGAGAATGAGGAAAGCGATGAATCGTGCAACACCAGACTCAACCGGACAGTGATTAACACCAATCCACCACAGGCTGTGACAGGCCCTCAAggaagaCAGAATGACTCCGAGATTAGCACAGaaaattTCATGAAGATTTTAGAAAAGGATGCGGAAGAcagaaggaagaggagaaagGAAAATGAGAAATTAGCAAATGCCCTCAAAGAAATGGGGAATGAGGCATTTGCAAAAGGTGACTATGAGACGGCCGTTCTACGGTACAGTGAAGGGCTCGAGAAAGTGCGTGACATGCAGGTCCTCTACACCAACAGGGCACAGGCCTATATTAAGCTGATGAAATATCAAGAGGCTATCGGTGACTGTGACTGGGCACTAAGGTGCAATGAGAAATGCATAAAGGCGTACATTCACATGGGACGGGCTCACCTGGCACTGCACAATTACAAGGAGGCTCGAAATTGTTATCATAGGATACTGGACATCGAGccaaaaagggaaaacataGTGCACGAGTATTTGAACCAAGTTGatttagaagaaaagaaagccCTTCAGGAACAGAAAGCACGGGCGGAGTTTGAACAAGGCAAGGAGAATGCCACCTCGGTGCTGGAACTGCTGCATAAACTGGGCAAGCCAGAGCAGATCAGCCTGTACTACACAGGGGGCATTTGCCTGCTGTCAGAAGCAATTAAAGACGGCACTGAGCAGACATTATTCCGAATACACAATGGCTTCAGTATCATCAACAGCAATCCCATTGTAAGAAGGAGTCTTTCACTGAAACAACCAGACCGATTTAATGATGACTTGTGCATTTCTGTACTCAATCTCTGGAAGGTGATTTGTGAGGGGAATGaggaaaaccaaaaaatattgaTACACTCTTCTGGCATCAGTGAGAATTTTGTCAACTTATTAGCATCAGAAACACCTGGGATACAGATGACATGCATACGTTTACTTTGCATTTACTCACAGACCCAATATGGCAGGAGTCTGGTCCTTCAAATCCTGGATCTGGACAAATTAGtggaaaacctgctgaagttcataaataataaagacatcACTGCCAAAACTGCTGTAGGTATTTTGGATCGCTTCGCTGGTGAACAAAAgtttAGAGTTCATTTCCAAGGCAACTTCACCACAACGTTTCTGCCTCCTTTCACAAGTCTTCtgAACAATATGCCCTCTGTGGACCTGACTGTGCTTCCTCCATGCATTTCAATGATGGCCAGCATGACAGGAGATGACATCATTCGAAAAAAGACAGCCAGTTGCCAGGAATGCTGGGAAGCCTTTCTCACCGCTATGGATGCCTGCGCTGTCTCTGATCAATCCTCTGAGGCCCAGGatgttttgtgtgctttgttgGGATTCATGATAAACATCTCCAAGGACCACACGCTAGCAATTGagAGAACCACGGGTCTTCTGAGCAACATCCTCCCACACTCTCATGCAGCTACAGAGGAGGCTGTTCAGAAAGGAATTGTGAAGAAAATGATCACATTTCTGAAGGCAGGAGGGCAGACAACCACTCATTTCTCAATCAAGACCCTGGCGATCTGCACCACAGCCAGCATACAAGCTCGGGAGGAACTTGTGAAGCTGGATAAGAAGCTTTGCACATTAGTTAAACTGCTGCGTACGGGTGACGAGGTGGTGGTTGGGAATGCGGCTCTCAGTCTAGGTCAGTGCCTGGAGGTACCAGGGGCCGCCTCCTCTCTTCTGGGCTCTGACATCGTCATGCTCTTGCTTAAGCATGCTGGAGGGGATGCCAGCAAGACCACAGTTCAACGAAATACCGCCATCGCCCTCGGCAGACTCTGCACAGTGGAACCCGGgcaTCTGATCGAGCTACGAAAACTGCACGGTTTAGAAATACTCGATTCCTGCATGAAGTACATTAAATGAAGGCCAGTTTGTTGGTCTTCTGAAAGGATTTTGTCCTGGATGTTTgttcaatacaaatgtgtttattacatCTGTGAATTCGACAGTTAAAGCTGCTGTTCAGAAGTTGTTCAAAATGTTATTCagtattttgcttatttttcccctctcttgTAGGTCAGCTTTAATGTTGATTTTTACTGTAACTAATTATCCATCGCccaaggaaacaaaatgtgccTCAGTCTGTGACGTCTTCCTTTCAACTTATGCAATAAACAGCTCTGTTTGCATAAATTACTACTTCTGTCAATGCTTTGTGTACTTTGTAAGCAAGAAGGCATACTTTTCACCTAAGG

Function

GO: NA

KEGG:

id description
K24652 TTC12; tetratricopeptide repeat protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9903 lncRNA downstream 440780 48463181 ~ 48470217 (-) True AMCG00004412
TU9819 lncRNA downstream 1224430 47685925 ~ 47686567 (-) True G7979
TU9818 lncRNA downstream 1225123 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 1262415 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 1604408 47296874 ~ 47306589 (-) False AMCG00004403
TU9987 lncRNA upstream 15502 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 15502 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 24812 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 26230 48956794 ~ 48958363 (-) False AMCG00004420
TU9998 lncRNA upstream 47060 48977624 ~ 49048073 (-) True G8118
AMCG00004418 mRNA downstream 15996 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004413 mRNA downstream 326596 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004412 mRNA downstream 430282 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004409 mRNA downstream 485288 48404180 ~ 48425709 (-) True AMCG00004409
AMCG00004411 mRNA downstream 509462 48400326 ~ 48401535 (-) True AMCG00004411
AMCG00004419 mRNA upstream 1901 48932465 ~ 48934416 (-) True AMCG00004419
AMCG00004420 mRNA upstream 9460 48940024 ~ 48985311 (-) False AMCG00004420
AMCG00004423 mRNA upstream 319672 49250236 ~ 49259701 (-) True AMCG00004423
AMCG00004429 mRNA upstream 480643 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004432 mRNA upstream 507393 49437957 ~ 49439719 (-) True AMCG00004432
TU9801 other downstream 1604408 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2023660 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2442563 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2603678 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4388784 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 1018297 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 1074568 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1740502 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1793303 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 3023100 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile