RNA id: AMCG00004419


Basic Information

Item Value
RNA id AMCG00004419
length 825
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004419
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48932465 ~ 48934416 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACGTGTCATCTTTGCGCCAGCACTGGAGACTCACAATGGCGTTCACCGAGGGAGAGCACTATCACAGCCACTTCAACCCCAGAGTCTATATCGACTCTTTCTATGTCTGTCCATCAGGCCACCCAGATGAAAACTGCCTGTCTTTCGTCTTACGCAACCTTAGTGAAACCTTTTCGTCAGGTAGGTACAAGGGACAGACACTCATTGAAGTAGGAAGTGGCCCCACAGTCCACAGCGTTGTGAGCGCCTGCGACCATTTCCAAGACATTGTCCTGTCCGACTTCACTGAGACCAATCGCCTGGAAGTCCAGAAATGGCTGAGAGGAGATGAGGGGTGTTTTGACTGGAGCCCAGTTATACAGTTCGTCAGTGAACTGGAAGGGAAAAGAACACCCAAGGAAATGGAAGAGAGGCTGAGACGAACAGTGAAGCAGGTGCTGCCGTGTGACGTCAGGCACGAGAATCCCTTCCACCCCCTCGTCCTGGAGCCTGCGGACTGTGTGCTGACCTCCCTGTGCCTCGAAGCGGCCTGTAAGGACCATCCTACCTACCAGCAAGCTCTGAAAAATGTCACGGCGCTTCTGAGACCTGGTGGGGTGTTGATAATGATTGGGGTTTTAAATGAAACCTTTTATGTTGTAGGGGAACACAGGCTGTCCTGCCTACCTTTGAGCCAGACCTTTGTTGAAAATGCACTAAAGGATCTGGGCTTCAGCATCCAAAAAAACGATATCCTCCCCATGCCAGacagagacaaaaataaagtttcagATTGtgaggcatttttttttctcattgctgaaaaaatgaaaaatgtgtaa

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00541 NNMT; nicotinamide N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9903 lncRNA downstream 462248 48463181 ~ 48470217 (-) True AMCG00004412
TU9819 lncRNA downstream 1245898 47685925 ~ 47686567 (-) True G7979
TU9818 lncRNA downstream 1246591 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 1283883 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 1625876 47296874 ~ 47306589 (-) False AMCG00004403
TU9987 lncRNA upstream 11650 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 11650 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 20960 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 22378 48956794 ~ 48958363 (-) False AMCG00004420
TU9998 lncRNA upstream 43208 48977624 ~ 49048073 (-) True G8118
AMCG00004417 mRNA downstream 1901 48910997 ~ 48930564 (-) True AMCG00004417
AMCG00004418 mRNA downstream 37464 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004413 mRNA downstream 348064 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004412 mRNA downstream 451750 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004409 mRNA downstream 506756 48404180 ~ 48425709 (-) True AMCG00004409
AMCG00004420 mRNA upstream 5608 48940024 ~ 48985311 (-) False AMCG00004420
AMCG00004423 mRNA upstream 315820 49250236 ~ 49259701 (-) True AMCG00004423
AMCG00004429 mRNA upstream 476791 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004432 mRNA upstream 503541 49437957 ~ 49439719 (-) True AMCG00004432
AMCG00004433 mRNA upstream 516412 49450828 ~ 49461400 (-) True AMCG00004433
TU9801 other downstream 1625876 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2045128 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2464031 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2625146 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4410252 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 1014445 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 1070716 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1736650 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1789451 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 3019248 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile