RNA id: TU9987


Basic Information

Item Value
RNA id TU9987
length 822
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00004420
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48940024 ~ 48985311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGCCCTCCATTGGGAAAGGGCTCGTATCGGCACCGGAcgtagatatgtatttttgtgccatACATATTTTCGTCGACAATTGTCTGGAGTTTAAAGTTAACGCAAATCTGAAGATAAAATCGTAGCAACTATGCcactaaaacaaaaaggctGCAAATGATGGTTCCTAGTTGAGGAGAGGCCCATCCTCTTCGGTGACTTGTTTGGTAGCATAACAACGCAATTGGTGATGAAACTTTTCGTTAAGCAACATGTAcgcaatcccaggtgggggagaTGCCCGTTGTACGCTTGAGCAAGTTCCAACCCCACCGGTTTCATTTGCATTCGATTGTGAAGTTTGCCATCGCCTCTTACCTGATCAACTACGCAGATCTTCAGCAGTGCAGGTGACTGTGATCCACAGACAACAACGATGGATGGAAGTGGAACCCACGCTCGCTCCAATGTCTCGTCCTACCTGACTTGCTCAATTTTGAACCTGTTATGCTGCTGTTTACCTCTTGGAATTGTCGCTGTGATCTTTTCAGTAAAGGCTGACACTGCCAACAACCAGGGAGATGTGTTGGAAGCACGGAAATCAGCCCAAATAGCCAAGATTCTCAACATAGTGGGACTTGTGTGTGGCCTCATTCTCATCATTCTTGTTATTGTTCTCAATTCTGTGGCACTTTACTTGAAGACTACCTAACATGATTTTGGGGGGGATGATTTAATCACCAACTTGGAACAGACTTGTCTTGCTGTACTTGTATACTGTGCTCTGTATTATTagctgtaataaatcacatttaaccTGAATTGTCCTAGTTCAAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9903 lncRNA downstream 475849 48463181 ~ 48470217 (-) True AMCG00004412
TU9819 lncRNA downstream 1259499 47685925 ~ 47686567 (-) True G7979
TU9818 lncRNA downstream 1260192 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 1297484 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 1639477 47296874 ~ 47306589 (-) False AMCG00004403
TU9993 lncRNA upstream 6480 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 7898 48956794 ~ 48958363 (-) False AMCG00004420
TU9998 lncRNA upstream 28728 48977624 ~ 49048073 (-) True G8118
TU10015 lncRNA upstream 152812 49101708 ~ 49101912 (-) True G8133
TU10066 lncRNA upstream 473748 49422644 ~ 49425182 (-) True AMCG00004429
AMCG00004419 mRNA downstream 11650 48932465 ~ 48934416 (-) True AMCG00004419
AMCG00004417 mRNA downstream 15502 48910997 ~ 48930564 (-) True AMCG00004417
AMCG00004418 mRNA downstream 51065 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004413 mRNA downstream 361665 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004412 mRNA downstream 465351 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004423 mRNA upstream 301340 49250236 ~ 49259701 (-) True AMCG00004423
AMCG00004429 mRNA upstream 462311 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004432 mRNA upstream 489061 49437957 ~ 49439719 (-) True AMCG00004432
AMCG00004433 mRNA upstream 501932 49450828 ~ 49461400 (-) True AMCG00004433
AMCG00004435 mRNA upstream 633227 49582123 ~ 49588829 (-) True AMCG00004435
TU9801 other downstream 1639477 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2058729 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2477632 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2638747 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4423853 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 999965 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 1056236 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1722170 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1774971 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 3004768 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile