RNA id: AMCG00004423


Basic Information

Item Value
RNA id AMCG00004423
length 1890
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00004423
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49250236 ~ 49259701 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCTGTGTGGAGCCACCACCTGCGACACACTGGGCATGGCGGACGTGGGGACAATGTGCGACTCCAAGAGAAGCTGCTCGGTCATCGAGGACGATGGCCTTCCTTCGGCCTTCACCACGGCACACGAGCTGGGACATGTCTTCAATATGCCCCATGATAACGTGAAGGCCTGCGAGGAGGTGTTCGGGAGGCTGAAGGACAATCACATGATGTCTCCCACGCTAATCCAGATTGACCGCTCTAACCCCTGGTCCGCCTGCAGTGCGGCCATTGTCACCGACTTCCTGGACAGTGGCCACGGGGACTGTCTCCTGGACCAGCCTCAGAAGTTGCTGGCTCTGCCCGAGACGCTCCCCGGCACCAACTACAACCTGAACCGGCAATGTGAGCTGGCGTTCGGCATTGGCTCCAAGCCCTGCCCTTACATGCAGTCCTGCACCAAGCTGTGGTGCACCGGCCAAGCCCGCGGCCAGCTGGTGTGCCAGACCCGCCACTTCCCCTGGGCCGACGGAACCAACTGCGGTGATGGCAAGTTCTGTCTGAGAGGAGTCTGCACCGAGAAGCACGACGTCACCAAGAATAAGGTAGACGGCCGATGGGGGAAGTGGGGCGTCTTTGGCTCCTGCTCTCGGACCTGCGGCGGGGGGGTCCAGCTGGCGAAGAGGGAATGCAACAACCCAGTACCAGCCAATGGGGGCAAATACTGTCAGGGGCTGCGTGTCAAATATCGCTCCTGCAACCTGGAGTCCTGCCCTGACACAGgtaaAAGCTTCCGAGAAGAGCAGTGTGAAGCCTTCAATGGCTTCAGTCTCAACACGAACAGGCTGACTCCTTCTGTGGTGTGGGTGCCAAAGTACTCCGGAGTCTCCCCCAAGGACAAGTGCAAGCTCATCTGCCGGGCAAACGGCACGGGATACTTTTACGTTCTTGCCCCTAAGGTGGTAGATGGAACGCCCTGCACCCCAGACTCCTCAGCGCTCTGTGTGCAAGGGAAGTGCATAAAGGCCGGGTGCGATGGGAAACTGAGCTCCAATAAAAAGTTTGACAAGTGCGGCGTGTGCGGCGGCGACAACAAGAGCTGCAAAAAGGTGTCGGGCTTATTCACGAAACCCATACAAGGCTACAACTTTGTGGTGATGCTGCCGATTGGAGCCTCCAACGTTGACGTCAGACAGCGGGGCTACAAGGGGATGGTGAACGACGACAACTACCTAGCGGTGAAGAACAGCCAGGGAAAGTACCTGCTGAATGGGAACTACGTAGTGTCCGCGGTGGAGAAGGACATCATCGTGCGGGGCAGCCTGCTGCGCTACAGCGGCACAGCCACGGCGGTGGAAATGCTGCAGGCCTTCAAGCCCTTGCAAGAGCCCCTGACCGTGGAGGTCCTGTCGGTGGGGAAAATGACCCCGCCACGCGTGCGCTACTCCTTCTACTTGCccaaggagaacaaggaggaGAAGATGGCCTACAAGAAGGAGGCAAAAGCCAACTCGCATAATAGCGTCCTGGTGGAGTCCAACAAGGTGGAGCTGAAGAAGCCTCCATACAAAAGGCAGATGTTCAAATGGGCTGTAGGCAGCTGGGACGACTGCTCTGTGACGTGCGGTAACGGCCTGCAGAAGAGGATGGTGGAGTGTCTTGATGGGGATGGGAAATCGGCCACTGACTGTGACTCAACCCAGCGGCCAAACGACATCCGGCTGTGCGGAGACCCATGTCCAGTGTGGGACATCGGAGACTGGTCACCCTGCTCCAAAACTTGTGGGAAAGGGTTCAAAAGACGGGTTTTACGCTGCATGACTCAGACTGGTCTGCTCCTGCCCAGAGATCACTGTACCAGCAAAAAGAAACCACAGGAACTTGACTTCTGCACACTACGGCCGTGCTAA

Function

GO: NA

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10015 lncRNA downstream 148324 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 202163 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 291873 48956794 ~ 48958363 (-) False AMCG00004420
TU9993 lncRNA downstream 293773 48955376 ~ 48956463 (-) True G8116
TU9987 lncRNA downstream 301340 48946066 ~ 48948896 (-) True AMCG00004420
TU10066 lncRNA upstream 162943 49422644 ~ 49425182 (-) True AMCG00004429
TU10228 lncRNA upstream 551677 49811378 ~ 49814054 (-) True G8281
TU10233 lncRNA upstream 584881 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 684597 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 688182 49947883 ~ 49948531 (-) True G8308
AMCG00004420 mRNA downstream 264925 48940024 ~ 48985311 (-) False AMCG00004420
AMCG00004419 mRNA downstream 315820 48932465 ~ 48934416 (-) True AMCG00004419
AMCG00004417 mRNA downstream 319672 48910997 ~ 48930564 (-) True AMCG00004417
AMCG00004418 mRNA downstream 355235 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004413 mRNA downstream 665835 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004429 mRNA upstream 151506 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004432 mRNA upstream 178256 49437957 ~ 49439719 (-) True AMCG00004432
AMCG00004433 mRNA upstream 191127 49450828 ~ 49461400 (-) True AMCG00004433
AMCG00004435 mRNA upstream 322422 49582123 ~ 49588829 (-) True AMCG00004435
AMCG00004436 mRNA upstream 342453 49602154 ~ 49603347 (-) True AMCG00004436
TU9801 other downstream 1943647 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2362899 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2781802 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2942917 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4728023 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 689160 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 745431 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1411365 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1464166 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2693963 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile