RNA id: AMCG00004433


Basic Information

Item Value
RNA id AMCG00004433
length 954
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00004433
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49450828 ~ 49461400 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCCTCAGAGCATCCCCCCCGGCCGTACCAGGGGGTACGTGTGAAAGAGCCAGTTAAGGACCTgctgaagaggaagagaggaaatCGGAGCAACATTAAGTCACCATCTGCCGCCACAGTTGTGGTGCCACATACTGCCCTCTCAGCATATCCTCAATTTGGCCATGCCAGTTTTATGGAAGTTGGTGGCACCGGCTCGGAGCTGTCTCAGGCTGAGGACGGTGCAATCTGCACTGGCTGGCTCACCCAGCCCACAGCCACCACACTGCAGCCCATGACCCACTGGACGTCGTGCCCCGAGTACCTGCCCCATGACCAGCCGTTACCCTCGTATTCTACAGATATGTATGTGCAGCCTGTGTGTCCCAGCTACACAGTTGTGGGGCCCTCCTCTGTGCTCACCTACACACATACTCCTCTCTTCACTAACTTTGGGACCAGAAACCCGCCTTCCACAACCCTGCCCCAAGCAGACCTCCCAGACTCCTCTCTGGCCTACTTCCCCTGGGCCCAACCCCTGGCTGCTTTGCCTGCTCCGGCCATGCAGTGTCCCCCCGGTGTCACGCCCTTCACGGGCACGCAGCTCCTGCCCCTGCCCATCACCGTGCCCGAGCCAGACCCTGAACGGCTGGAACAGGCCAGGAGCACTGTGGCCAGCCTCCCCATTGAGAAGCTGCTGGAGGAGGATGATGACAAGGACACGATTCTCCACATTTATGTAGCCAAAGAAATGAGAGAATATGCCTTTGCAGCTGCCGAGAAAATGAGAGACTTGCACAGAATCGACGCCAAGGAACACCACGGAAAGACTCCCCTGCTGGTTGCTGTGGCTGCCAATCAGCCTTATATCCTGCATGATCTCATTGGTCTTGGAGCTGATGTGAATGTGGTTGATGATAAAGGCCAGACAGCTCTCCACCTCGCTTCCATATATGGTTACTTGGAAGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10066 lncRNA downstream 25646 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 348916 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 402755 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 492465 48956794 ~ 48958363 (-) False AMCG00004420
TU9993 lncRNA downstream 494365 48955376 ~ 48956463 (-) True G8116
TU10228 lncRNA upstream 349978 49811378 ~ 49814054 (-) True G8281
TU10233 lncRNA upstream 383182 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 482898 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 486483 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 489450 49950850 ~ 49951534 (-) True G8309
AMCG00004432 mRNA downstream 11109 49437957 ~ 49439719 (-) True AMCG00004432
AMCG00004429 mRNA downstream 25842 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004423 mRNA downstream 191127 49250236 ~ 49259701 (-) True AMCG00004423
AMCG00004420 mRNA downstream 465517 48940024 ~ 48985311 (-) False AMCG00004420
AMCG00004419 mRNA downstream 516412 48932465 ~ 48934416 (-) True AMCG00004419
AMCG00004435 mRNA upstream 120723 49582123 ~ 49588829 (-) True AMCG00004435
AMCG00004436 mRNA upstream 140754 49602154 ~ 49603347 (-) True AMCG00004436
AMCG00004438 mRNA upstream 175242 49636642 ~ 49663855 (-) True AMCG00004438
AMCG00004439 mRNA upstream 285428 49746828 ~ 49753116 (-) True AMCG00004439
AMCG00004440 mRNA upstream 306877 49768277 ~ 49772278 (-) True AMCG00004440
TU9801 other downstream 2144239 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2563491 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2982394 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3143509 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4928615 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 487461 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 543732 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1209666 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1262467 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2492264 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile