RNA id: AMCG00004440


Basic Information

Item Value
RNA id AMCG00004440
length 330
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00004440
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49768277 ~ 49772278 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGAAGAGGCAAAACCGGCGGGAAAGCCCGTGCTAAGGCCAAGTCCCGTAGCTCTAGAGCGGGCCTGCAGTTCCCCGTCGGCCGCGTCCACAGACTGCTGCGCAAGGGCAACTATGCTGAGCGCGTCGGCGCCGGAGCCCCGGATCTCCTTGGCCCCTTTGCTCAGCAGCAGCTTGGCCAGGTCCGTGCCCAGCCGCTCCGCCGCGTCCTGCGCCACGCCAGCGACGTTCAGCGCTGTGATGCCAACCCGCTGGGCACTGTCATCTGCCCTGTCCTCTACCTGCAGCGAGACCAGAGAGAGCAAGAGTCACAACTCCAGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10066 lncRNA downstream 343095 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 666365 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 720204 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 809914 48956794 ~ 48958363 (-) False AMCG00004420
TU9993 lncRNA downstream 811814 48955376 ~ 48956463 (-) True G8116
TU10228 lncRNA upstream 39100 49811378 ~ 49814054 (-) True G8281
TU10233 lncRNA upstream 72304 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 172020 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 175605 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 178572 49950850 ~ 49951534 (-) True G8309
AMCG00004439 mRNA downstream 15161 49746828 ~ 49753116 (-) True AMCG00004439
AMCG00004438 mRNA downstream 104422 49636642 ~ 49663855 (-) True AMCG00004438
AMCG00004436 mRNA downstream 164930 49602154 ~ 49603347 (-) True AMCG00004436
AMCG00004435 mRNA downstream 179448 49582123 ~ 49588829 (-) True AMCG00004435
AMCG00004433 mRNA downstream 306877 49450828 ~ 49461400 (-) True AMCG00004433
AMCG00004444 mRNA upstream 3646 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004446 mRNA upstream 48277 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004445 mRNA upstream 58921 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004447 mRNA upstream 67257 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004456 mRNA upstream 269981 50042259 ~ 50048074 (-) True AMCG00004456
TU9801 other downstream 2461688 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2880940 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3299843 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3460958 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5246064 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 176583 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 232854 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 898788 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 951589 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2181386 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile