RNA id: AMCG00004444


Basic Information

Item Value
RNA id AMCG00004444
length 5404
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00004444
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49775924 ~ 49796184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGTTCTGTCGCTATTCCGAGAGTACTGTTCGCAGCATCGAGCCTGGGAATCGAAACTGTCTGTATTTCGTGCAAATGGGCAACAATATCACAATAATACTGAGAGAAGTTAACGACTTCACCTTGTAGCTGCCTCGCTGGTGGATcgaaaggaagaagaagagggaggAATCAGGCAAACGCATTTGGGATCATTATCGTGCATCTGCATCATTGCCACTGTCTTGTTGCGACAGCAGCCTCTCTTTGCTACTTAACTGTGGAAAGggattacaaaaaaagaagaaataaaatcagcTTGCACGGGAAAAACGTTTTGCTTTGTTGATAATAGTGTTTTAATTGCAGAGCTAGTTGTATTGCATTATAGGCACTAACGATACAGTCTCTAATTGTAGCACTGCTAACAGAAACAGCACGGGTGGAAATCATATTGATACAAATAGTGATACAAAGTAACTTAACACTGTCGGCAAACAAGCAGCTACGCAAATTGTCTGCATCGATGGCACATTACACAACTGAGGGACTGGGTCTGAGTATAATGGGAATATGGAAATGACTGGGATGTAACCAGTTAACAGGAGCGATGTGAGCGACGTGTATCCACCTGGACCAGAgcacctggagagagaggagcgATTTATTTCATTGCAAccatttcacaatgcatttatcGCTGTAACAATGCATTGAAGACTTTAAGCCCAGGGCTTTACATATAAATGACGACAGGGGCTCTCCGATTTTTTTCTGtgtacttattaatttattgcagAAGTGACCAGAGCATCTTTCAGGCAATCTGTCTGTAACTAGATGTGTTGGGAAGTtagcaaatataataataataataataatgtgtgtgtacatgcataTCCCTTTATCCATAAAGTCCATGTATTTGATTTAACTCGTCATTATCCGGAGTGTAGAGCTTTCCGTCCAGATGCCAAAgtcttttttaaaaaacaatattgcctTTTAGGCTATTATATTTAACAATCTTACATTGAATGACTGATGCATTACGTctatgtaatatattattatatttgttgtaaGTATTACAAGCACTAGTGTAGGATCACAGCAGCGCAGTCGGATAAAAGGTTGGGTTTTTTTATGCTGATTTTGCTCTTTGAATGAAGATTCTTTATCAGTGTATTCTGCAATATTGTCAGGGTATCATTTGACATTAAGGATGGCAATGGTGACATTTCAAGATATCAGCTGGTGGATTTTGGTGTCCCTCTTCTTAGCCTCCTTGTTGACAGTACTGGCCTGGCTGGTGCAGTATTCCAGAGGACTACTGGGTGGCAGGAGTCAAAGTGTGGGAACCCAGGACAGGTCGGCAAGTGGTGGCATCTCTGTGGCACTGCCAAGCCCATCGCAGTACCAGCTCCGAGCCAGGGGTGTGTGGGGATCCCTGCTAAAGCTAGGCTTTGGGAGAGATGGAGGAGCCGGCAGTGGAGGAGCGAGTGATGCTGGGGTGAAGGGCTTGCTGTCTTCACTGTTCGCATTCAAGTCCTTCCGGGAGAACTGGCAAAGGACCTGGGTTCAAGCGCTCAATGAGCAAGCGTGTCGGAATGGGAGCTCCATACAGATTAACTTTGAGGACAGTCTGCAACTTCCCACCTCTGCCTCCATCAGTCATGTGACCTGCACAGATCAATCAGAACACAGTATGGTGTTAGAGTGCCACTGCGTTGTCGACTCAGTGACTTTCCCAGTGACGGTCACCCAGCAGTCCCCCGCTGCTGTTTCCATGGATACATACCAGGTCAACATGGCGCCCATGCATGCTCAGTTGGTGGTCTGCCTAGAAGAGATTGAGGAAGAAGGCCTTCTGGTCTCCTGGTCTTTCTCTGAGCACCCCCTGCTCTCCCTCACCATCACACCACGAAAGGTGCAACGGGAGGAGAGTGATGGGAAGGTGGACACCGGCACCATTGCTGAGCTGGTGAAAGACACCATCGTCAGCACACAGCCAGCCATGATCGTCAACCTCAAGGCCTGCGTCTCCAGCCCTGTGGCCCCTGGAGAGCGTCTGGTCAGGGGTGTCCACACCCCCTCCACGGAAACCCCTCTGTGCCGGCTCCTAGTCCGACAGCTCAGGGCCAGCAGTATCAGTGGAGCAGGAAGAGGAGgctGGGGAGAGCTGTGCTGTGCCCTGGAGCTGGACCACCCTGCCCAGCAGAGGAGGACACGCTTCCTGTCCCCTCCTTCAAGTCCAGGATCCAAGCTGGAGTGGAGCGAGGATGTCACACTGGATCTGGGCCCTAGCAGCAAGGAGCTGAGACTCAGACTGCTGGCGTACCTGGATCCCACTGAGCCCCGCAGCTGGCAGTGTGCCGCTCCGCTGCGCCCCTCCCTCACCCCCACCAAGAAGGTGGAGATGGACCGCACCATCATGCCCGACGGGACTATTGTCACCACAGTTACCACCATCCAATCACGGCCCAAGCTGGACTGCAAGCTGGACTCACCCTCCTGCTCCCCTTCCAAGGTGGAGGTGACCGAGAAGAAGCCCACAGTCCTTGCAGACAGCATCCGGGACACCGGGGTCTCTCCTACTACCAGCTCTCTTGTTCATGCTGGGGATGATGGCCACCTCTCCAACGGGCTGGACCCCGTGGCCGAGACCGCAATCCGACAGCTGACAGAGTCGGCCAGCAAGGCTGTGAAGAAAACGCCCACCAAGAGGAGCACACTCATCATATCAGGAGTGTCCAAGGTTCCGATTGCGGAGGACGATGCGGCTCTGTCGATCGGCTACGCGGCATCGATGGATGCAGCCCTCCACGGGGAGGCCTGCCACGGAGCCTCCAACCACTCTGCCACCAGCTCCCAGGCCACAATGCAGCCGGATCCCGACGAGACCACGCGCTCAGACATCTCGGAGAGGCCCTCCGTAGATGATGTAGAGTCAGAGACTGGCTCAACTGGGGCGCTGGAGACGCGCAGCCTCAAAGACCACAAAGTGGGGTTCCTGCGAAGTGGTACCAAACTCCTCTTCCGCCGGCGACATCGTCAGAAGAACCCGAGCCTCAGCCAATCACACGAGGACGTCTCCAACCTGGGCAACGGCTCGGCTGTGCGCAAGAAGTCGGGCAGCTTCTCGCGGCGCCTCATCAAACGCTTCTCCTTCCGCTCCAAATCCAAGAACAAGGCCAGTGCCAACGGAGGGGCGGCCGGCGGGGAGAACTGAGCGGGGCATCAGCAGGAGGGCGAGGGCGTGCTACTCGGCTAAGTGCAAGGACCCTGTACCCAGGATTGACCCCTGTGGAACACCTATCGTGTACAAACCCACGCACATCCCAAACTGTGCAGGATCCTCTGAAGACATTAATCTGGAAACAAGGAAGAAGGAAATCTTCACTGCCAGTCTGAATCTCCTGGGATTCTCTGGCTCCCTGCAGCAGGAGCGATGGATCTGAAGGACAGTGTAGGTGGTGCAGCACTGAATTCCTGCGCAGCGAGGCTCTCCCTAACCAAAATTGCTGAATATTTCCAAAGCCAGACCCTGTTCTTTTTTAGCACTGCGAAGTGTGGCCAATGCCATATCATAGAATGGATACTACAAGGGATTTTGAAAGTAGGCAGATATTTTTTGCACTAATGAAAATGATGGggggaagaacaaaacaaaacatctgtctattttttaaactctCTTTAAGCATTATGTCTTAATCTCCCtgtatatttttgcattatCATGGTACACATTTCGAGTTCATCTCTTTACTTGATTGAAACAACTATTTTTAACCTGGAATTGCAGCTATATTCTACCCTGGCTGAGCTGTAATAATGTAGTCATGTAGACGCAAAGCTGCTGTGCACAAGATCTGCAGTATGACTATGGAATGCACTTACAGTATTTCCTGGGGGTTAATGGACTCCTAATGCCTGCGGCCCACAGTTGTTCGAGTGAAACCCATCTGTGTGTCACAGCAGGAGGAATGCAGCACTGAGATGTACAGTGACCTGGGTGAGCTTTGCACTACTGACCCCACTGCTTGTACAAGGATCGGGCCTGCCATGGATACAGGATCGTCTATTGTTGCTGTGTAGCTTCAAAAAGAGGAAAGCCAAATCTGAAGAAAATCACCACTTGGGGTTAGGGAGATTTGTCTtttctcttcatatttttttcacactATTATTCCTGTTCAGATATCCATGGTGTCTTCAAAGAAATAATGGAAAACAGAGTCCATTTCACAGAGGGGGGCCAGCGAGAGCAATATGCCATCCTGAcgatctctctctgtgtgaggaGATTCTGATCTGAATCTCGGCACATTTACACTTGAGCTGGCCAGATGGGCTTATATCGACACGCATACGAGGTTTAGTGGAGCCGAGAACAAAATCCTGGATGGATGCTCCCTGGGTGAGGGGCACATGACACCGTGCTGCACTTCAGGAAAATAGGCTGATCTGGAACTGGTAATGGCCCGGAGAGACTTTGTGACTGTTTAGCTTCCTGCATATCTATTGGGCCGAATAATAGGTGCTGATTGTCCTGCTGGTGTGGAATGCATTCTCTCTGGGGACAACTGTGTGCAAAGGGTAATTGGGGGGGATGTGTTTGAGCTACATATTGAGTATAGGGAATTTACAGGCAGCTAATGGTGTGACTATGGTGATGGTGGCTAAACTTTGGTTACTGGTGGTCCGGTTGAgggtgtttatttgttttcattttctcttgtttgtttgttcatttgttgttgtttttttctttgttgataAAACAATGCTGGGCATTTTATAGCACATTTGATTAACACTAAATTTCCCCCAAAGGTCAGTCAATGAATAGTGAATCTTGTTGTGCAATAGAAATGTGTTGAACTCCATCTGTTTCATTCCCCTGTAGATTTCAGATGGAAACACCACCTTTACTTTTTGATTCTGTTTGTTGGTGTATACAATGTGTCTCTGTTGCAAATCactgagagtttttttttttctctcagaaaaagggaaaaacatattttgaggTGACCATACAGTTTGCTGCAGTAATGTAATGATTGTAAGGAAACAATCAAATTGAGCAAACTGTAGCTTTAAGGGCATTAACATAACACTATCTCATATCGTTCCTTATATTGGTGAAATCACTGGAACCATAGGCAGTGAACTTGGACTGCTGTTCAGTGCTACATATCCCAGACAGGCTAGTAAATCTGAAAAGGAACAACAGGGAAATCTTTCCTGGAAAAAAACTTAAACCAAATTACCAAACAGGAGCAGGGCTGTGCTACAAGATTTATACAGGTTCTAATTATGATGGGTTTTTTACCTTTAAGTTGCAATTCCTGCACTTTTCTTGCACACTGTAGGGTATAAATGaatcaatgtttatttgtacctttaaaaaaa

Function

GO:

id name namespace
GO:0010605 negative regulation of macromolecule metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10066 lncRNA downstream 350742 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 674012 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 727851 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 817561 48956794 ~ 48958363 (-) False AMCG00004420
TU9993 lncRNA downstream 819461 48955376 ~ 48956463 (-) True G8116
TU10228 lncRNA upstream 15194 49811378 ~ 49814054 (-) True G8281
TU10233 lncRNA upstream 48398 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 148114 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 151699 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 154666 49950850 ~ 49951534 (-) True G8309
AMCG00004440 mRNA downstream 3646 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004439 mRNA downstream 22808 49746828 ~ 49753116 (-) True AMCG00004439
AMCG00004438 mRNA downstream 112069 49636642 ~ 49663855 (-) True AMCG00004438
AMCG00004436 mRNA downstream 172577 49602154 ~ 49603347 (-) True AMCG00004436
AMCG00004435 mRNA downstream 187095 49582123 ~ 49588829 (-) True AMCG00004435
AMCG00004446 mRNA upstream 24371 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004445 mRNA upstream 35015 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004447 mRNA upstream 43351 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004456 mRNA upstream 246075 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 274351 50070535 ~ 50071941 (-) False AMCG00004457
TU9801 other downstream 2469335 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2888587 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3307490 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3468605 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5253711 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 152677 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 208948 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 874882 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 927683 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2157480 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile