RNA id: AMCG00004446


Basic Information

Item Value
RNA id AMCG00004446
length 1049
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00004446
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49820555 ~ 49822910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATGAAGGAAGTAGGTGAGAAAAATTGGAGCGTTCTGAACATTGTTAAACTGACAGAAAAGctacagaattattttaaagataaaggaaaaatcaacaacaaacttggtttttgaaatattttattaaggaaaCATGTCCTTCACTGCATGTCCTTCATACATCGGCATAGTTCCACCTCAGACCGCAAGCGTCATATACCAAATCTGACTAATCTGGTGCGATAGAATTGCGTTTCCAAACGCCTCTTCCTGCATCAGATCAGTGACATCAGAAAGTATAAAAAGCTTTGTGCATGTTTCGGTACCGCAGACAGAAGTTGCTGAAAAGATGGCTCTGACTGTGACACTGCTCctctctgctctgctgctgctccaggGGGTCCTGACTCAATCAGGCTCGGAATATACAGTCTCACTGTCAGTGCAGAACACCATCAACAATCTCCCGACGCTGACATACACAACCACCATCCCATATAGAGCTATCCTGCTGGGGgcaatgaggaaaataaacaaggcCGACCCTCAAAACTTCAGTTTTGACATCAGAGAGGACTCTAACTACGGCCCCTTCCTGGTCAGTGTGAACGGAGTGGCTGGATGCAACACTGATCACACTTACTGGCAGCTGCTGAAGACCGATGGCACTGCCCTGGATGTGGGTGTCGGGTGTTACATCCCAGATCCCAATGAAACTGTCATCTTTAACTTCACCACCTATTGAATTAACTGGAGTATCGATATCTATGTACCTATCCATCTATCCACTTTCCTCAATGCTGACAAATTACTTTTCTCAACACTTATTTTGTAACTGCCTTGATTTTATCAGTTACTGTtctgaagtgaaataaaattatactgAAGACAATCTTGTTGATGTCACTCTATTTGTTCTGGGAAAGTTGAGGGCTAGCATTCCTCTTTGTTAAACCACACTGACAAACAATGATCTGATATGTGCTCATCTTACTGTTCCCTGTATAAAAATGCACCTGGAGGCTATGACGTTGGTCCAGGGGCTCCTCGAGGTTCCATAAAACGTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10228 lncRNA downstream 6501 49811378 ~ 49814054 (-) True G8281
TU10066 lncRNA downstream 395373 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 718643 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 772482 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 862192 48956794 ~ 48958363 (-) False AMCG00004420
TU10233 lncRNA upstream 21672 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 121388 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 124973 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 127940 49950850 ~ 49951534 (-) True G8309
TU10287 lncRNA upstream 161595 49984505 ~ 49988218 (-) True G8335
AMCG00004444 mRNA downstream 24371 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 48277 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004439 mRNA downstream 67439 49746828 ~ 49753116 (-) True AMCG00004439
AMCG00004438 mRNA downstream 156700 49636642 ~ 49663855 (-) True AMCG00004438
AMCG00004436 mRNA downstream 217208 49602154 ~ 49603347 (-) True AMCG00004436
AMCG00004445 mRNA upstream 8289 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004447 mRNA upstream 16625 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004456 mRNA upstream 219349 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 247625 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 321800 50144710 ~ 50157745 (-) True AMCG00004460
TU9801 other downstream 2513966 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2933218 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3352121 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3513236 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5298342 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 125951 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 182222 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 848156 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 900957 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2130754 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile