RNA id: AMCG00004447


Basic Information

Item Value
RNA id AMCG00004447
length 945
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00004447
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49839535 ~ 49841520 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCAATATGACTAAAATCTGAAGTCAGTGCGATAGAATTGTGTCACCAAACGCCTGTTCCTGCTACAGATCAGTGACAGCAGAGATTGTATAAAAAGCTTGTGTGTGTTTCGGTTCTGCAGACAGAAGCTGCTGACAAGATGGCTCTGACGGTGACACTGTTCCTCTCCGCTCTGCTGCTGCTTCCAGTGCTCCTTGCACAGTCAGCCACAGAGTATCCGGTCACACTGGTAGTGCAGGACACCATCAACAACCGCCAACTGTTGACATACACAACCATCATCCCATATAGGGCTGTCCTGCTGGGGGCGATGAGGAAAATAAACCAGGCTAATCCCAAGAACTTCAGGTTTGAGACCAGAGAGGACCCTAACTATGGCCCCTTCCTGGTCAGTGTGAACGGAGTGGCTGGGAACGACACTGCCCACACTTACTGGCAGCTGCTGAAGGCTGATGGCACCCCCACAGATGTGGGTGTTGGGTGTTACATTCCAGAGCCCAATGAAACTGTCACTCTGAAGTTCACCACCTGGGATTAGAATTAACTGTGCTATCTATCTATCGACTGATGCACACTTTCCCAAACTTCCCAACTAAACATTACTGAAACCGCAATAACCATTTCTAATAGGTATGTGTCACTTTTGGGCTTTCATGGTTCAGATTATCTTTCTCGTTAAAACAAGCACCTATATTGTATCTGCCTTGAATTTCTCTGCTACTGTtctgaagtgaaataaaatggtaCTGAAGACAATCTTGTATGTTGATGTCACTCtctattaatttgaataaagttTTGGGGAATGTTGGCTAGCATTCCTCTCAGTTAAACCACACTGACAAACAATGATCTGATCTGTGCTCATATTACCATTCCCTGTATAAAAATGCACCTGGGAGCCATGAGGTAGGTCCAGGGGCTCTTGGAGGATCTACAGA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10228 lncRNA downstream 25481 49811378 ~ 49814054 (-) True G8281
TU10066 lncRNA downstream 414353 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 737623 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 791462 48977624 ~ 49048073 (-) True G8118
TU10000 lncRNA downstream 881172 48956794 ~ 48958363 (-) False AMCG00004420
TU10233 lncRNA upstream 3062 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 102778 49944298 ~ 49945808 (-) True G8307
TU10257 lncRNA upstream 106363 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 109330 49950850 ~ 49951534 (-) True G8309
TU10287 lncRNA upstream 142985 49984505 ~ 49988218 (-) True G8335
AMCG00004445 mRNA downstream 5795 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 16625 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 43351 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 67257 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004439 mRNA downstream 86419 49746828 ~ 49753116 (-) True AMCG00004439
AMCG00004456 mRNA upstream 200739 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 229015 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 303190 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 328556 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 347172 50188692 ~ 50197647 (-) True AMCG00004465
TU9801 other downstream 2532946 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2952198 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3371101 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3532216 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5317322 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 107341 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 163612 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 829546 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 882347 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2112144 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile