RNA id: AMCG00004456


Basic Information

Item Value
RNA id AMCG00004456
length 2361
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00004456
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50042259 ~ 50048074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttctttttttccttgtccaaagaggggaggggaaaactttaaacttttattgttattagaaCTGCCACAAAGTCCAAGACCTGTTCTAATTTGGTGCATTTCTCACTGGGGTGCAGCCTGAAAGAGACTCAATCGGGACGTGAATTGAATTGGACCATGAATTCATTCCAGCTCtggcctctctccctcttcctttcCCTGCTGATCAATCCATCTGTTCAGATTGAGGATAACCAGATACCCAGCCTGTGCTCAGGGCAGCCTGGCATCCCAGGATCCCCTGGGGGGCATGGCAGTCCAGGCCAGCCAGGGCGGGATGGTAGAGATGGGAGAGATGCTGCCCCTGGGGAGAAGGGGGCCAAAGGAGACGTGGGAGAACCAGGGCTGTCGGGTGTGAGGGGAGACCGTGGAGACCAGGGGGATCCAGGAGTGAAGGGCGAGAGGGGGCAGCCAGGGGAGTGTGCTGTGGCACCCAAGTCGGCCTTCAGCGCCAAGCTGTCAGAGACCAAGAGTGGGCCGCCCCCTGTGGGCGAGGCGGTGCGCTTCGAGACAGTGTTGCTGAACGAGCAGGGCCACTACGACCCTGAGACGGGCCGATTCACCTGCAGAGTGCCGGGCGTCTACTACTTTGCCGTGCACGCCACAGTCTACCGTGCCAGCCTGCAGTTCGACCTGATGAAGAACGGGCACATCGAAGCCTCTTACTTCCAGTACTATGGGAACTGGCCCAAGCCGGCCTCTCTGTCCGGGGGCTCTCTGCTACACCTCGTGCCCAGTGATCAGGTGTGGATACAGATGGGCCTGGGCGAGTACAATGGCTTCTACTCCAGCCAAAAGACGGACAGCACCTTCAGCGGCTTCCTGGTCTACTCTGACTGGAAGAACTCTGCTGTCTTCGCTTAGGAAACGCATGCCAGGACACacgcatgcgcacacacacacagataaagaCAGTAGAAGGTATTAAAACCGTCCAGAAAAATGTCAGTAAATCCTTCATTCCGATTGGAAAAGTAACTGAGAGTGCTAGCAAATGTGTTTGACGTCTGTCTTCACCGGttttgaagagaaaagtattgaaatattatagagttcaaatatatatatatcatcatttCAAAGATTTTTAACACATATCATTCTTCTGTGTAGTCATTCTTCTCTGTAATGATCTGTCTTTCTATCTCTCATGAAGCACCACATTACTGGTACACCACTTCAGGGGTAAACTGATCTCATGACCTCACACTTCCACCTCTGAAATTTTTTGAGAAATATCCATGCTGCACACCTTTAACACAAATGCAGGCATCACAACATCTCCAAAACGGGTCTGAATCACGCATCGCCATTGCTGTAGTAAAAACAAGTATGCCGGCTATACACGTGCTACAGTCTGGATGAGCACCGCAGAGTTCAGCATGCCTGTaagacaaattatttaatgtagTGAATGTATCGCCTGGGGACCAGCTCTCCAACACTTACATCATATTCCATCTACAGATGTCAGAAACAGAAGCCTCACTTTCCTGTTTTAAACAAGGTGAGGTTTTGGCGTGAAATGAAGagcatgcgcacacacacacacacgcacacacccatTCCCTTTTGCCTTCTTCAAACTTGCCTTATTCCTCTGTGTCGGTGAAAAAGAACAATCCACACTGTGTGGAGCTCACCACTCACTTCTGCCCTTTCAACTGCTGCCCGATGGTCTGAAGTACACATTACATAAGGAGCTTGTGCATTCTGGGAAATGTACAATTTTACTCACCTGgttgcatttgaaattaaagtaaaatcaaCACATGCTCGGTGGCATTTGGTTCTCTGTGTTAACGTGTCCCATGAGAAAGTTATAATCCTTTCTGTCTGCAAAGTCCTGGAATATGAACTTCAGAGGCTTGttccttttttccctccttggttttaaaacatgttcCTAAAAACCCCCAAAAggatatataaaagaaaaagaacaccAATACTGTGGTCCAAATATGTTTCCGTTGGCTCTTGTAAGCTGGAATTTAGTTAGTTTGAACTTGGTTTACCATGTATTTGAACAAtgtcactgcacacacagagctTCAAAGCACTTGGAGTTTCTCTCGCAACCCTAACAGCTGGGACATGGCTAGCCCTGATTTTTGCCTCAGGATTTAGGTTTCCTTCGAAATTtgcaagacatttaaacaagtcCATTTTCCAGTAAGAGTTCTAAATGATTTTGGACAAATGCCTACATCTTCATGACTGTTTTATAGGTGTTctcacctacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24212 C1QTNF5; complement C1q and tumor necrosis factor-related protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10303 lncRNA downstream 3904 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 22235 50019824 ~ 50020024 (-) True G8347
TU10299 lncRNA downstream 26474 50015539 ~ 50015785 (-) True G8346
TU10298 lncRNA downstream 27507 50014390 ~ 50014752 (-) True G8345
TU10296 lncRNA downstream 28878 50013144 ~ 50013381 (-) True G8343
TU10314 lncRNA upstream 18324 50066398 ~ 50069172 (-) False AMCG00004457
TU10312 lncRNA upstream 18410 50066484 ~ 50070801 (-) True AMCG00004457
TU10333 lncRNA upstream 79698 50127772 ~ 50135731 (-) True G8370
TU10376 lncRNA upstream 164118 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 620872 50668946 ~ 50674553 (-) True G8500
AMCG00004447 mRNA downstream 200739 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 208519 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 219349 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 246075 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 269981 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004457 mRNA upstream 22461 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 96636 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 122002 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 140618 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004467 mRNA upstream 161909 50209983 ~ 50225826 (-) True AMCG00004467
TU10293 other downstream 33565 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 92667 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2735670 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3154922 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3573825 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 622992 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 675793 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1905590 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2017452 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 2019979 52068053 ~ 52071586 (-) True G8761

Expression Profile