RNA id: TU10314


Basic Information

Item Value
RNA id TU10314
length 2775
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id AMCG00004457
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50066398 ~ 50071941 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttttttttttttttttttttttttctttgaaactgATTTACTAGTGTATTCAGGTAGACTAGTCTTAACATAAGGAGTTAGACTCAAGTCATACTAAAGAGTATAAGAGGTTAGATGACTCTTGCTGTGCCTAATGTGTTAGCCTCCTTTCTTCCAGGTTAACCTGCTGACTTTTGTGTATTCAGCACATCCTTCGCAGCTTTAGCCTCACTGGTCTATGCAAACTGCACCCTGGTCAGGTGACTGCCCCCCCGTAGCGAAATATGATGGACACTGGATGTAGACTGCTGGATTTAGTTTGTCCTTTTTCTCTGCTGTGGATTTGTCCCCTAAAAAGAATTGTGGTTGAATCTGGCAACACACCCTCCATAACTAATGTTAGAGATATTAGGAAaagctattatttaaaatgctttttgtataacttaattacattttctgattcttccttccttttagtttggattctgttttgtttttctcaatccTTTCCTCCATCGCACCTCGATTACTGCCTCGTTCTGAAGTGCAAAAGAGAAATGGAGAGCCGCACCAGCCATCGATCTGTTGTCCAAAATGAACGTTTACTTTGTGTTAGAAAGCTGCGATCTTTACCCCTTTATTTGTGTCATCACTAAAAAGGTATTGATCAGCACGCTGAGAAATATAATGTTACAGGTTTACAGCAGAAAATGGCTAGGGGATTTTCGCTAgcaattgcattatgctttttttattgcctTCCTCATTGCCTCAtgagtgaaagagagagcaagaaaaaactaaaccaaacaaatacaaattccGATAAGAGTTCATATTTGGCCTGGTGATATGAAGGAATGTTCCAGATAATAATTGTTTTGACATCAGGTCTGTTTCAATATCACTGTGCTTGAATCCTGGGCAGACTATGTGGCTTTTTACAGCTGCTGTGTAGGACTTAGTTTCTCAAAACATTGACCGGCAGCGTTTcccatttgtttatattaaccggttttaatttatttccaaaactCTTACCAACTaacttaccttttttttttttttagtttttctctctgcATTTGTGGTGTGCTGAAATCATTGAGGCCCTAAATTCATACCAAGTGGTCTTCTTAATGATATGTTAATgcttaaaactaaaacaaattagAGATCCTCTTGAGTCATGGGATACTGGATGACTGACCTTAAACAGTTACCAAGCAGTCAAATTCTGTGGTCTTCATAGGTGGTTAACATCACACATTAAATCTTAGTCTCAACCACATCTCTCTGCCTACTTAAAGGCGCAATGCCACAACACCTGTCAACACAGTGCTCATCTTTACAAAAACAGCCGACATCTTGGCTTGTGCGCTTGTGAAAATGATCATTATCTAAACGGTCTTCCAAATGTAAGGGCTTAAACTGTTTTCTGCCTCTACACAGCCTAATATCACTCTGTCCTTGTTTGACTTCTTCAATCACATTAGTTTCTGCTGGTGTTGCTGCTCgtttcatttgcttttttctgtgTCCAAAACATTCCAGGCTAAAATGGTCACTCAAAGAAATCAATCGCATAGacgaaaaaaaaatacagcaaaagcTAAAGTGCTAAATCAAAGGGCCACTTTGTTATTTGGCGATTTTTCTCGTTGGCAaagcagtctttttttattggCTTTAATGTGGGAAGTCACCGTAGCAAAATTATTTAAGATCATGGAAGCTTAGCCAGTTTTCGAAAGTGCTTAATCAGTCTTGTAAGCTTTCAAGCTTTATTCTGTCCTCTCAAAAGAGCAGTTGTAATGAAATGACTTGTTTtctaacttaaaaataatgctgTTATCGCATTACATCACAACAGTAAGcctaaagcattttctttttttcctctgggCTTTGTGGGTTTGCAGCCGTTTTGTGACTGATGGACTAACAGTAATTGTGCACAGTCCTTCAAGTTAGAAACTAAAATTTACTGGGACAGCTGGTTAAAGTGGCAAACTAGTGCTGCATCTGTACAGAAACCGGTCTTAAATATACAGACCAGGTGTGCTGATAGGAGTctgtaaaatgcaaacaagtgGAGATGGAGGCCTGTTCCTGTAGGAGCAGACACCGAAGGGAGAGAGGCGCACTGTACACCGAAAGCTGCCCGTATTTAGCTCACATTGCTCAAGTCAAGCAAAAATGATAACGGGACTGACGCTATGGCATGTGCTCCTGTCCTTCCACTGAATTAATGATTGTGCTGTTGAGCACTGTTTAAAGTGTTGCAGGCCTTGATCATTTGCCACGAGATAACACTAAAGTCTTCCACAGTCCacgtgttttttttgtatactcATTCATCATTCCTAGTGTGCAGTAGTAAGCAGAGAGGAATGCAGTGGTTTGCTATTGCGGCGTCATTTGTGTAGGTAAGTCGGCATTAAAAGCCTTGTGTAACGCAGATGGAGACAAACTATGTCTCTTGAGTTTTGAATCTGCTGGATATGTCGCTTTATGCTATGGGGTGTTGCAATAATATGTggagtttttcctttttctcttatTGGGGGGGATGTTTGGCCTCATTTGGAACAAGCTGTGTGTAACTGTGGCTCCAAGAAATTCTTTTCAAAACACTCAATAAATGTTCTCCTTTTTAAGAAGTGAGGTGTtcctatattttttttacatgtttacatctgtatatattatcatcattagcAGCACCATTTGAAACTGTCAacgatacattttctttaataaatactgttcaTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10303 lncRNA downstream 28043 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 46374 50019824 ~ 50020024 (-) True G8347
TU10299 lncRNA downstream 50613 50015539 ~ 50015785 (-) True G8346
TU10298 lncRNA downstream 51646 50014390 ~ 50014752 (-) True G8345
TU10296 lncRNA downstream 53017 50013144 ~ 50013381 (-) True G8343
TU10333 lncRNA upstream 58600 50127772 ~ 50135731 (-) True G8370
TU10376 lncRNA upstream 143020 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 599774 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 612458 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 625402 50694574 ~ 50694803 (-) True G8524
AMCG00004456 mRNA downstream 18324 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004447 mRNA downstream 224878 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 232658 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 243488 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 270214 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004457 mRNA upstream 1363 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 75538 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 100904 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 119520 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004467 mRNA upstream 140811 50209983 ~ 50225826 (-) True AMCG00004467
TU10293 other downstream 57704 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 116806 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2759809 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3179061 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3597964 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 601894 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 654695 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1884492 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1996354 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1998881 52068053 ~ 52071586 (-) True G8761

Expression Profile